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Tutorial: Mass Spectrometry Data Analysis with the Spectra Package
mass spectrometry proteomics metabolomics Tutorial
written 5.3 years ago by ★ 2.1k
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Thermo Xcalibur RAW data to MGF
mass spectrometry massspectrometry
updated 7.7 years ago by 1.6k • written 7.7 years ago by ▴ 10
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Job: Post-doctoral mass spectrometry and proteomics bioinformatician (updated)
bioinformatics proteomics mass spectrometry job Job
8.6 years ago • updated 8.5 years ago Laurent Gatto 1.6k
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News: May Institute Computation and statistics for mass spectrometry and proteomics
proteomics mass spectrometry biostatistics News
8.9 years ago Laurent Gatto 1.6k
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Not latest package version through 'BiocManager::install()'
debug BiocManager R pacakge R mass spectrometry
6.2 years ago wang.lingjue • 0
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R function to deconvolve ESI MS spectra of multiple charge large biopolymers
mass spectrometry R mzR
7.7 years ago andreas.breidbach • 0
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Scans vs Spectra
mass spectrometry mzr/ msnbase
7.6 years ago Ed Siefker ▴ 230
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News: May Institute Computation and statistics for mass spectrometry and proteomics
conference mass spectrometry proteomics News
6.1 years ago shepherl 4.3k
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MAIT or Specmine
metabolomics mait specmine mass spectrometry
8.2 years ago bhgyu ▴ 30
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Shotgun lipidomics analysis
shotgun lipidomics lipidomics mass spectrometry
10.0 years ago Titan • 0
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News: Announcing short course in computational proteomics, May 2-6, 2016, Boston MA
proteomics tutorial mass spectrometry computational biology News
9.9 years ago Olga Vitek ▴ 40
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Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
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A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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