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Not latest package version through 'BiocManager::install()'
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updated 7.7 years ago by 1.6k • written 7.7 years ago by ▴ 10
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Tutorial: Mass Spectrometry Data Analysis with the Spectra Package
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Job: Post-doctoral mass spectrometry and proteomics bioinformatician (updated)
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MAIT or Specmine
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10.0 years ago Titan • 0
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R function to deconvolve ESI MS spectra of multiple charge large biopolymers
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7.7 years ago andreas.breidbach • 0
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News: Announcing short course in computational proteomics, May 2-6, 2016, Boston MA
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9.9 years ago Olga Vitek ▴ 40
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News: May Institute Computation and statistics for mass spectrometry and proteomics
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8.9 years ago Laurent Gatto 1.6k
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News: May Institute Computation and statistics for mass spectrometry and proteomics
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6.1 years ago shepherl 4.3k
11 results • Page 1 of 1
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Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k
Yes, making a group factor simplifies things, and you will need a new column for disease subject to avoid having a design that is not full …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Yes, Gender is more a nuisance factor in our experiment, and our primary interest is to compare groups. I will just use filter…
Votes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
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