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meme
•
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0
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792
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Plotting motif enrichment vs background - Jaspar core vertebrates
pwm
motifs
jaspar
meme
motif analysis
5.4 years ago
rbronste
▴ 60
1
vote
2
replies
1.2k
views
Split AME .tsv file into GRanges object or DataFrame
meme
ame
motif
dataframe
granges
updated 5.5 years ago by
Michael Lawrence
★ 11k • written 5.5 years ago by
rbronste
▴ 60
0
votes
0
replies
691
views
Trying to load several MEME formatted motifs for use in motifStack
motifstack
meme
6.2 years ago
aramp10
• 0
1
vote
2
replies
1.1k
views
motifStack importMatrix problem reading meme file to pcm
motifstack
meme
updated 6.2 years ago by
Ou, Jianhong
★ 1.3k • written 6.2 years ago by
lmolla
▴ 10
0
votes
0
replies
1.3k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
8.1 years ago
enricoferrero
▴ 660
0
votes
0
replies
1.4k
views
Repetitive motifs on Illumina 450k derived sequences
illumina
450k
motifs
meme
8.3 years ago
Gustavo Fernández Bayón
▴ 440
2
votes
1
reply
3.8k
views
Please suggest any good motif Discovery tool in R-Bioconductor.
motif
motifdb
meme
updated 8.5 years ago by
Hervé Pagès
16k • written 8.5 years ago by
vinod.acear
▴ 50
7 results • Page
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Comment: DNAString: Standard checksum function?
by
Henrik Bengtsson
★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Comment: fgsea significant result
by
Chris
• 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Votes
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
package goseq seems to be not available on the latest version of R
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