Showing : memory • reset
2
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2.2k
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Expected memory usage for analyzing large single-cell seq datasets (> 450,000 cells)?
BigData Clustering memory SingleCellExperiment edgeR
updated 16 months ago by ★ 29k • written 16 months ago by • 0
0
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0
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1.1k
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Running > 100 samples per group - memory issues
xcms memory findchrompeaks
4.7 years ago abrsoule ▴ 30
1
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3
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2.1k
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DEXSeq with large(ish) number of samples
DEXSeq exon memory dispersions estimateDispersions
5.6 years ago andreismolnikov00 • 0
1
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9
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2.1k
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Memory issues in summarizeOverlaps funtion
memory summarizeOverlaps
updated 6.9 years ago by 68k • written 6.9 years ago by ▴ 10
0
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0
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1.5k
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'memory not mapped' error when running monocole
monocole memory CellDataSet
8.6 years ago Assa Yeroslaviz ★ 1.5k
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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