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memory
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2
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2.1k
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Expected memory usage for analyzing large single-cell seq datasets (> 450,000 cells)?
BigData
Clustering
memory
SingleCellExperiment
edgeR
updated 15 months ago by
Aaron Lun
★ 29k • written 15 months ago by
Joseph
• 0
0
votes
0
replies
1.1k
views
Running > 100 samples per group - memory issues
xcms
memory
findchrompeaks
4.6 years ago
abrsoule
▴ 30
1
vote
3
replies
2.0k
views
DEXSeq with large(ish) number of samples
DEXSeq
exon
memory
dispersions
estimateDispersions
5.6 years ago
andreismolnikov00
• 0
1
vote
9
replies
2.1k
views
Memory issues in summarizeOverlaps funtion
memory
summarizeOverlaps
updated 6.8 years ago by
James W. MacDonald
68k • written 6.8 years ago by
Diana
▴ 10
0
votes
0
replies
1.5k
views
'memory not mapped' error when running monocole
monocole
memory
CellDataSet
8.6 years ago
Assa Yeroslaviz
★ 1.5k
5 results • Page
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
Answer: Finding duplicated entries in GRangesList
by
Kevin Blighe
★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data
by
Kevin Blighe
★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
Votes
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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