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memory problem
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split champ.load for large number of samples
memory problem
champ.load
5.5 years ago
petra.lenzini
• 0
0
votes
4
replies
949
views
DESeq2 memory allocation question
deseq2
memory problem
updated 5.5 years ago by
Michael Love
41k • written 5.5 years ago by
rbronste
▴ 60
1
vote
2
replies
917
views
How to handle big data sets (>10GB) in Bioconductor packages?
big data
methylmix
memory problem
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
perdedorium
• 0
0
votes
1
reply
833
views
ProcessAmplicons using very little memory on big job?
edgeR
processamplicons
memory problem
5.8 years ago
sdalin
• 0
0
votes
3
replies
1.6k
views
GAIA package Error: cannot allocate vector of size 852.1 Mb
memory problem
gaia
updated 6.4 years ago by
Sandro Morganella
▴ 40 • written 6.4 years ago by
drusmanbashir
• 0
2
votes
3
replies
1.6k
views
Problem with memory limit in Rstudio/Windows when importing Affymetrix HTA 2.0 CEL files with oligo R package
oligo
hta2.0
affymetrix microarrays
memory problem
updated 7.1 years ago by
James W. MacDonald
65k • written 7.1 years ago by
svlachavas
▴ 830
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Comment: Help with error using camera() in limma
by
James W. MacDonald
65k
Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …
Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! That is a great tip. cameraRes <- camera(numeric_matrix, geneSets, inter.gene.cor=0.01, design) Error in Stat[iset]…
Answer: Help with error using camera() in limma
by
James W. MacDonald
65k
The first step should be to read the help page, which says ``` Usage: ## Default S3 method: camera(y, index, design, cont…
Comment: Assist me in determining whether the analysis process using the limma package ha
by
James W. MacDonald
65k
The description of the analysis says there are 120 genes at a 1.5 fold change and a p<0.05. They don't mention any multiplicity correction.…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
When using `arrayWeights()`, you mean the variability within the same group, is that correct? I alway run `arrayWeights()` because I naive …
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Answer: Help with error using camera() in limma
Answer: Help with error using camera() in limma
Comment: Why p value inconsistent when using different number of pathway score?
Nominations for Bioconductor Awards 2024!
Answer: Improving the design matrices vignette in RNAseq123
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