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memory problem
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split champ.load for large number of samples
memory problem
champ.load
5.5 years ago
petra.lenzini
• 0
0
votes
4
replies
949
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DESeq2 memory allocation question
deseq2
memory problem
updated 5.5 years ago by
Michael Love
41k • written 5.5 years ago by
rbronste
▴ 60
1
vote
2
replies
917
views
How to handle big data sets (>10GB) in Bioconductor packages?
big data
methylmix
memory problem
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
perdedorium
• 0
0
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1
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834
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ProcessAmplicons using very little memory on big job?
edgeR
processamplicons
memory problem
5.8 years ago
sdalin
• 0
0
votes
3
replies
1.6k
views
GAIA package Error: cannot allocate vector of size 852.1 Mb
memory problem
gaia
updated 6.4 years ago by
Sandro Morganella
▴ 40 • written 6.4 years ago by
drusmanbashir
• 0
2
votes
3
replies
1.6k
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Problem with memory limit in Rstudio/Windows when importing Affymetrix HTA 2.0 CEL files with oligo R package
oligo
hta2.0
affymetrix microarrays
memory problem
updated 7.1 years ago by
James W. MacDonald
65k • written 7.1 years ago by
svlachavas
▴ 830
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Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
• 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment
by
XW
• 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
by
James W. MacDonald
65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Comment: Help with error using camera() in limma
by
James W. MacDonald
65k
Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …
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C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
Comment: Help with error using camera() in limma
Answer: Help with error using camera() in limma
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