Bioconductor MetagenomeSeq

Showing : metagenomeSeq • reset

votes

replies

1.7k

views

metagenomeSeq fitTimeSeries microbiome

10.8 years ago noelle.noyes ▴ 30

votes

replies

1.9k

views

metagenomeSeq microbiome

10.8 years ago noelle.noyes ▴ 30

votes

3.0k

views

metagenomeSeq

updated 10.8 years ago by Joseph Nathaniel Paulson ▴ 280 • written 10.8 years ago by noelle.noyes ▴ 30

votes

1.9k

views

Metagenomics metagenomeSeq Metagenomics metagenomeSeq

updated 11.6 years ago by Joseph Nathaniel Paulson ▴ 280 • written 11.6 years ago by Guest User ★ 13k

votes

1.9k

views

PROMISE metagenomeSeq PROMISE metagenomeSeq

updated 11.6 years ago by Joseph Nathaniel Paulson ▴ 280 • written 11.6 years ago by Guest User ★ 13k

votes

replies

1.4k

views

Normalization metagenomeSeq Normalization metagenomeSeq

12.1 years ago Hector Corrada Bravo ▴ 40

56 results • Page 2 of 2

Recent ...

Replies

Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 10

thank you so much for answering Dr. Love!

Answer: DESeq2 for candidate gene analysis by Michael Love 43k

Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…

Comment: Join BOC Sciences at Drug Discovery Chemistry by teamardigen • 0

Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …

Votes

Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Join BOC Sciences at Drug Discovery Chemistry

Drug datasets for RNA-seq

Comment: Check removeBatchEffect effectiveness

Awards • All