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methods
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Defining BSgenome -> GRanges S4 coercer without package attaching
BSgenome
methods
GenomicRanges
4.9 years ago
Aditya
▴ 160
0
votes
1
reply
836
views
Why does S4Vectors define three functions for Vector -> data.frame coercion
S4Vectors
methods
4.9 years ago
Aditya
▴ 160
2
votes
2
replies
1.2k
views
SetMethod to dispatch on class in unattached package
s4
methods
SummarizedExperiment
updated 5.5 years ago by
Aaron Lun
★ 28k • written 5.5 years ago by
brendan.innes
▴ 20
0
votes
3
replies
1.2k
views
How to clear a cached S4 method
devtools
S4
methods
cache
5.7 years ago
Michael Steinbaugh
▴ 90
0
votes
0
replies
961
views
Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution
methods
6.5 years ago
casey.rimland
▴ 160
5 results • Page
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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