Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
methods
•
reset
0
votes
3
replies
837
views
Defining BSgenome -> GRanges S4 coercer without package attaching
BSgenome
methods
GenomicRanges
3.7 years ago
Aditya
▴ 160
0
votes
1
reply
527
views
Why does S4Vectors define three functions for Vector -> data.frame coercion
S4Vectors
methods
3.7 years ago
Aditya
▴ 160
1
vote
2
replies
665
views
SetMethod to dispatch on class in unattached package
s4
methods
SummarizedExperiment
updated 4.3 years ago by
Aaron Lun
★ 28k • written 4.3 years ago by
brendan.innes
▴ 10
0
votes
3
replies
757
views
How to clear a cached S4 method
devtools
S4
methods
cache
4.5 years ago
Michael Steinbaugh
▴ 90
0
votes
0
replies
611
views
Deconvolute bulk RNA-Seq from human epithelial tissue scrapings with immune/blood cell contamination
deconvolution
methods
5.3 years ago
casey.rimland
▴ 150
5 results • Page
1 of 1
Recent ...
Replies
Comment: Visualization of negative log CPM values
by
Gordon Smyth
47k
Sorry, but some of the things you say are not correct. > compound B has 2 statistically significant genes that are up-regulated No, there…
Comment: Visualization of negative log CPM values
by
ATpoint
★ 2.8k
Applies to both.
Comment: Visualization of negative log CPM values
by
Sabiha
▴ 10
@atpoint OK, are you referring to the `log2(cpm+1)` or `log2(tpm+1)`
Comment: Visualization of negative log CPM values
by
Sabiha
▴ 10
@gordonsmyth noted. Related to the graphs above, the table below is the output from `limma`, and compound B has 2 statistically significant…
Comment: Visualization of negative log CPM values
by
Gordon Smyth
47k
> negative scale might perhaps indicate gene is too low to be really expressed. Yes, negative logCPMs do mean that the gene is expressed a…
Votes
Comment: Visualization of negative log CPM values
Any efficient workaround to identify highly variable genes in Affymetrix microarray expression data?
Filtering low intensity probes in microarray data
Comment: Visualization of negative log CPM values
Adjusting for baseline when having longitudinal data, mixed model and no treatment
Awards
• All
Popular Question
to
ioannis.vardaxis
▴ 30
Scholar
to
Erqiang Hu
▴ 50
Popular Question
to
Matthew Thornton
▴ 350
Scholar
to
Hervé Pagès
16k
Popular Question
to
Habil Zare
▴ 170
Locations
• All
United States,
4 minutes ago
WEHI, Melbourne, Australia,
18 minutes ago
Seattle, WA, United States,
25 minutes ago
Melbourne, Australia,
27 minutes ago
Japan,
33 minutes ago
Traffic: 235 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6