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How can I download Methylation data for MethylMix package. (unusual error popped)
MethylMix
4.7 years ago • updated 4.6 years ago Shloka Negi • 0
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how to paralelize this R script in a HPC cluster using Slurm Workload Manager?
methylation epigenomics slurm mpi methylmix
updated 5.3 years ago by ★ 4.0k • written 5.3 years ago by ▴ 20
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stuck in "Finding nonparametric adjustments" with MethylMix package.
MethylMix
updated 5.3 years ago by ★ 4.0k • written 5.3 years ago by • 0
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Methylmix results are a bit different from beta values results
cancer methylmix methylation betavalues DMvalues
5.8 years ago luciomora8 • 0
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How to handle big data sets (>10GB) in Bioconductor packages?
big data methylmix memory problem
updated 7.2 years ago by 25k • written 7.2 years ago by • 0
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MethylMix takes so much time for preprocess step
MethylMix
7.3 years ago serbulentu • 0
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Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
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Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
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Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction by Kevin Blighe ★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
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Hi Joseph, I agree with ATpoint's suggestion that pseudobulk aggregation (e.g., via aggregateData in scran or similar) would likely be far…
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Answer: DESeq2 design for haplotype MPRA
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Answer: Failure to download resources (MeSHDb) from AnnotationHub
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Answer: Suppress warning in RHDF5 write
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