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methylmix
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How can I download Methylation data for MethylMix package. (unusual error popped)
MethylMix
4.7 years ago • updated 4.6 years ago
Shloka Negi
• 0
0
votes
1
reply
1.3k
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how to paralelize this R script in a HPC cluster using Slurm Workload Manager?
methylation
epigenomics
slurm
mpi
methylmix
updated 5.3 years ago by
Kevin Blighe
★ 4.0k • written 5.3 years ago by
parra.sev
▴ 20
0
votes
1
reply
1.1k
views
stuck in "Finding nonparametric adjustments" with MethylMix package.
MethylMix
updated 5.3 years ago by
Kevin Blighe
★ 4.0k • written 5.3 years ago by
sdjnchen
• 0
0
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0
replies
1.0k
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Methylmix results are a bit different from beta values results
cancer
methylmix
methylation
betavalues
DMvalues
5.8 years ago
luciomora8
• 0
1
vote
2
replies
1.4k
views
How to handle big data sets (>10GB) in Bioconductor packages?
big data
methylmix
memory problem
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
perdedorium
• 0
0
votes
0
replies
1.0k
views
MethylMix takes so much time for preprocess step
MethylMix
7.3 years ago
serbulentu
• 0
6 results • Page
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Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
by
Kevin Blighe
★ 4.0k
Hello Matthew, Thanks for the detailed description-this sounds like a classic challenge in sncRNA analysis, where piRNAs (and other tsRN…
Answer: VariantAnnotation does escape = within header string quotes
by
Kevin Blighe
★ 4.0k
Hi, Thanks for the minimal reproduction - this is very clear and confirms a bug in `VariantAnnotation::writeVcf()`. The issue is that th…
Answer: Setting up a DESeq2 Design with Paired Data
by
Kevin Blighe
★ 4.0k
Hello, Your design formula looks mostly correct to me, but I believe that `vessel_n` should be `replicate` (or whatever unique identifie…
Comment: Failure to download resources (MeSHDb) from AnnotationHub
by
Steve Lianoglou
★ 13k
That fixed it, thanks Lori!
Comment: Suppress warning in RHDF5 write
by
nicolas.lhuillier
• 0
Thanks a lot for the quick and effective reply. I had tried "suppressWarnings" but not "suppressMessages".
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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