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methylmix
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How can I download Methylation data for MethylMix package. (unusual error popped)
MethylMix
3.1 years ago
Shloka Negi
• 0
0
votes
1
reply
864
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how to paralelize this R script in a HPC cluster using Slurm Workload Manager?
methylation
epigenomics
slurm
mpi
methylmix
updated 3.8 years ago by
Kevin Blighe
★ 3.9k • written 3.8 years ago by
parra.sev
▴ 20
0
votes
1
reply
782
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stuck in "Finding nonparametric adjustments" with MethylMix package.
MethylMix
updated 3.8 years ago by
Kevin Blighe
★ 3.9k • written 3.8 years ago by
sdjnchen
• 0
0
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0
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674
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Methylmix results are a bit different from beta values results
cancer
methylmix
methylation
betavalues
DMvalues
4.3 years ago
luciomora8
• 0
1
vote
2
replies
920
views
How to handle big data sets (>10GB) in Bioconductor packages?
big data
methylmix
memory problem
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
perdedorium
• 0
0
votes
0
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782
views
MethylMix takes so much time for preprocess step
MethylMix
5.8 years ago
serbulentu
• 0
6 results • Page
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Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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