Bioconductor Mgcv

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mgcv easyRNASeq

updated 4.8 years ago by Martin Morgan 25k • written 4.8 years ago by Aliza ▴ 10

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annotation UCSC doing lib mgcv

updated 6.7 years ago by James W. MacDonald 68k • written 6.7 years ago by tdfyoder • 0

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goseq warning message pwf mgcv

updated 8.3 years ago by Nadia Davidson ▴ 320 • written 8.4 years ago by heikki.sarin ▴ 10

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rgl mgcv nlme package installation

updated 9.9 years ago by Gordon Smyth 53k • written 9.9 years ago by jacorvar ▴ 40

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mgcv snprelate

updated 10.0 years ago by Martin Morgan 25k • written 10.0 years ago by mail2vignesh1985 • 0

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package updates codetools deseq mgcv

updated 10.7 years ago by rodrigo_sengo • 0 • written 10.7 years ago by pbhamidipati • 0

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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0

For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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