Showing : motif • reset
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Split AME .tsv file into GRanges object or DataFrame
meme ame motif dataframe granges
updated 6.3 years ago by ★ 11k • written 6.3 years ago by ▴ 60
0
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3
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motif scanning using position frequncy matrix of motif in a given set of DNAstringset sequnces?.
motifdb matchpwm motif pwmenrich pwm
9.3 years ago vinod.acear ▴ 50
2
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4.5k
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Please suggest any good motif Discovery tool in R-Bioconductor.
motif motifdb meme
updated 9.3 years ago by 16k • written 9.3 years ago by ▴ 50
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2
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"Wobble" patterns for genome searching using Biostrings
biostrings bsgenome motif RGYW
9.6 years ago fongchunchan ▴ 30
4 results • Page 1 of 1
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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies by ATpoint ★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
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A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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