Bioconductor Motif

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motif motifdb meme

updated 10.3 years ago by Hervé Pagès 16k • written 10.3 years ago by vinod.acear ▴ 50

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biostrings bsgenome motif RGYW

10.6 years ago fongchunchan ▴ 30

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motifdb matchpwm motif pwmenrich pwm

10.3 years ago vinod.acear ▴ 50

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meme ame motif dataframe granges

updated 7.3 years ago by Michael Lawrence ★ 11k • written 7.3 years ago by rbronste ▴ 60

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Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20

Thanks both for this useful information.

Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k

SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…

Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0

Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …

Answer: Issue loading and downloading Bioconductor 3.22 packages after update by strawberry3 • 0

Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …

Answer: Issue loading and downloading Bioconductor 3.22 packages after update by James W. MacDonald 68k

As Robert and ATpoint have mentioned, you need to allow more time to download a large file like this. ``` > options(timeout = 5e5) > l…

Votes

Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?

Answer: Can sample-level weights be used when analysing GSVA scores in limma?

Comment: Can sample-level weights be used when analysing GSVA scores in limma?

Answer: Issue loading and downloading Bioconductor 3.22 packages after update

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