Bioconductor Motifbreakr

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739

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Biostrings aminoacid motifbreakR

written 13 months ago by wilson_ava • 0

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1.4k

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GenomeInfoDb motifbreakR

4.5 years ago Chris Seidel ▴ 80

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1.2k

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MotifbreakR R motifs

6.5 years ago camerond • 0

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3.2k

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motifbreakR vcf snps motif analysis

updated 7.3 years ago by Valerie Obenchain ★ 6.8k • written 7.3 years ago by svlachavas ▴ 840

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1.2k

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bioconductor motifbreakr plotmb

7.9 years ago priyankaraina10 • 0

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1.6k

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motifbreakR variantannotation

updated 10.0 years ago by Simon Coetzee ▴ 50 • written 10.0 years ago by ashley.doane ▴ 20

6 results • Page 1 of 1

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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0

Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…

Comment: Memory error while running alignments by Erik Wright ▴ 150

How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…

Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0

Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

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Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

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