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motifbreakr
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739
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Is there a function that takes an amino acid string and returns all biologically possible substitutions?
Biostrings
aminoacid
motifbreakR
written 13 months ago by
wilson_ava
• 0
0
votes
0
replies
1.4k
views
motifBreakR error with custom BSgenome
GenomeInfoDb
motifbreakR
4.5 years ago
Chris Seidel
▴ 80
0
votes
0
replies
1.2k
views
How are the MotifbreakR scores calculated, and how do they relate to one another?
MotifbreakR
R
motifs
6.5 years ago
camerond
• 0
2
votes
5
replies
3.2k
views
Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR
vcf
snps
motif analysis
updated 7.3 years ago by
Valerie Obenchain
★ 6.8k • written 7.3 years ago by
svlachavas
▴ 840
0
votes
0
replies
1.2k
views
Motif Breaker error
bioconductor
motifbreakr
plotmb
7.9 years ago
priyankaraina10
• 0
0
votes
2
replies
1.6k
views
motifbreakR VariantAnnotation namespace error on reading vcf file
motifbreakR
variantannotation
updated 10.0 years ago by
Simon Coetzee
▴ 50 • written 10.0 years ago by
ashley.doane
▴ 20
6 results • Page
1 of 1
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Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G
by
dzv20413
• 0
Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…
Comment: Memory error while running alignments
by
Erik Wright
▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
Gabriel
• 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames
by
ubjw24
• 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA
by
Rita
• 0
Thank you very much, I appreciate it!
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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