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msaPrettyPrint()
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2
votes
2
replies
3.5k
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How to get msa output in fasta format
msa
msaprettyprint()
updated 6.0 years ago by
UBod
▴ 290 • written 6.0 years ago by
cav3gh
• 0
0
votes
1
reply
1.4k
views
Status 1 error when using msaPrettyPrint() to make pdfs with MsaAAMultipleAlignment
msaprettyprint()
latex
pdf
msa
updated 6.3 years ago by
UBod
▴ 290 • written 6.3 years ago by
Cecil
• 0
2
votes
11
replies
5.1k
views
How do I extract the complete MsaAAMultipleAlignment object to a file
msaprettyprint()
msa
multiplealignment
export
updated 6.3 years ago by
UBod
▴ 290 • written 6.3 years ago by
Assa Yeroslaviz
★ 1.5k
8
votes
14
replies
11k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa
msaprettyprint()
fasta
updated 6.9 years ago by
tongtong.wang1210
• 0 • written 7.3 years ago by
Olorin
▴ 50
1
vote
2
replies
1.3k
views
msaPrettyPrint cannot handle long sequences?
msa
msaprettyprint()
multiple sequence alignment
7.2 years ago
map2085
▴ 40
1
vote
1
reply
4.7k
views
Using msa msaPrettyPrint(): issues with latex
msa
latex
msaPrettyPrint()
7.3 years ago
Olorin
▴ 50
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Thank you Tim, this is a great help in getting me started!
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Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
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See `?results`, in particular the lfcThreshold argument.
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You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
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I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
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Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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