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News: 2024 May Institute on computation and statistics for mass spectrometry and proteomics
MSstats MSstatsTMT MSstatsShiny MSstatsPTM
3 months ago kohler.d • 0
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Issues setting background in STRINGdb
STRINGdb MSstats
10 months ago samsiljee • 0
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Help about MSstats in skyline
Skyline.MS MSstats R
4.0 years ago pokhf123 • 0
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Memory usage and SWATH2stats
swath dia msstats swath2stats
updated 5.5 years ago by • 0 • written 5.5 years ago by • 0
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MaxQuant to MSstat question
msstats
5.5 years ago yasaman.jami • 0
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Cannot install and load MSstats package
proteomics massspectrometry msstats
updated 6.1 years ago by 1.6k • written 6.1 years ago by • 0
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News: LAST CHANCE: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
news proteomics course training msstats News
6.3 years ago mnchoi67 ▴ 40
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object 'feaMeasurements' not found for MSstats
R msstats
updated 6.3 years ago by • 0 • written 6.4 years ago by ▴ 10
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News: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
bioconductor training course msstats proteomics News
6.3 years ago mnchoi67 ▴ 40
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MSstats changes to dataprocess
MSstats
updated 6.3 years ago by ▴ 40 • written 6.3 years ago by • 0
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MSstats package update
MSstats
updated 6.5 years ago by 3.8k • written 6.5 years ago by • 0
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Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Comment: Help with error using camera() in limma by James W. MacDonald 65k
Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …
Comment: Help with error using camera() in limma by Chris • 0
Thanks James! That is a great tip. cameraRes <- camera(numeric_matrix, geneSets, inter.gene.cor=0.01, design) Error in Stat[iset]…
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Answer: Help with error using camera() in limma
Answer: Help with error using camera() in limma
Comment: Why p value inconsistent when using different number of pathway score?
Nominations for Bioconductor Awards 2024!
Answer: Improving the design matrices vignette in RNAseq123
Awards • All
Scholar to James W. MacDonald 65k
Popular Question to jeffrey.maurer • 0
Centurion to Chris • 0
Commentator to Leonard Goldstein ▴ 200
Popular Question to Matthew Ritchie ▴ 1000
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