Bioconductor Multiple testing correction

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IHW multiple testing correction covariate distribution

updated 6.0 years ago by Wolfgang Huber ★ 13k • written 6.0 years ago by lara.h.urban • 0

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qvalue pvalue histogram multiple testing correction

updated 6.4 years ago by Nikos Ignatiadis ▴ 180 • written 6.4 years ago by oliver.selmoni ▴ 10

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limma limma voom limma contrast matrix multiple testing correction

updated 7.7 years ago by James W. MacDonald 67k • written 7.7 years ago by gregory.l.stone ▴ 10

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885

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betr multiple testing correction

8.3 years ago moradzadeh_k921 • 0

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7.4k

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edgeR glmLRT() multiple factor design multiple testing correction

updated 9.9 years ago by Aaron Lun ★ 28k • written 9.9 years ago by Ekarl2 ▴ 80

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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0

The updated version worked well on my data. Thank you!

Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

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Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

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Scholar to Haibo Liu ▴ 20