Bioconductor Multiple treatments

Showing : multiple treatments • reset

votes

1.5k

views

deseq2 paired samples missing data multiple treatments

updated 6.0 years ago by Michael Love 42k • written 6.0 years ago by greg.deakin • 0

votes

replies

2.5k

views

differential gene expression limma voom multiple treatments

updated 6.4 years ago by James W. MacDonald 67k • written 6.4 years ago by vam3002 ▴ 10

vote

replies

4.1k

views

deseq2 multiple time points multiple treatments

updated 7.5 years ago by Michael Love 42k • written 7.5 years ago by Ting • 0

votes

replies

1.3k

views

bioinformatics paper multiple treatments biologicalreplicates

updated 8.4 years ago by Gordon Smyth 51k • written 8.4 years ago by Jurat Shahidin ▴ 80

votes

2.5k

views

microarray limma multiple treatments lfc

updated 8.5 years ago by Aaron Lun ★ 28k • written 8.5 years ago by brionyk9 • 0

5 results • Page 1 of 1

Recent ...

Replies

Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0

The updated version worked well on my data. Thank you!

Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Votes

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

Awards • All

Scholar to Haibo Liu ▴ 20