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no replicates
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0
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873
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MethylSig is not giving DMRs with no replicates
methylsig
no replicates
dmr
6.6 years ago
nilaycan
• 0
1
vote
5
replies
3.6k
views
steps to get up and down regulated genes using DESeq2
deseq2
without replicate
no replicates
updated 6.8 years ago by
Michael Love
43k • written 6.8 years ago by
Tony
• 0
4
votes
9
replies
11k
views
DESeq2, no replicate
deseq2
no replicates
high p-adj values
updated 2.6 years ago by
Michael Love
43k • written 7.4 years ago by
Mahtetie
• 0
4
votes
8
replies
2.2k
views
Advice regarding RNAseq data with no replicates, best approach to accomplish fold-change
rnaseq
edger
DGE
no replicates
7.5 years ago
Stefany Solano
• 0
2
votes
1
reply
1.5k
views
diffHiC with no biological replicates?
diffhic
estimate dispersion value
glm
no replicates
deseq
updated 7.9 years ago by
Aaron Lun
★ 28k • written 7.9 years ago by
hwick1
▴ 20
5
votes
7
replies
5.1k
views
Differential binding of ATAC-seq data with no replicates
ATAC
differential binding analysis
no replicates
DEseq2
chromatin
7.9 years ago
BioinfGuru
▴ 70
6 results • Page
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Comment: For some reason I can't update BiocManager to 3.20
by
shepherl
4.1k
It seems likely this was installed as an admin account and a user account would not be able to update. Someone with admin access should run…
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
by
James W. MacDonald
68k
Any query over the internet can vary in the time to completion due to the vagaries of the connection you may have. I just tried your query …
Answer: batch effect removal for agilent microarray data
by
James W. MacDonald
68k
If all of the samples in group 155 are one type, and all the other samples in 438 are the other, then no. The biological and technical vari…
Answer: Automatically install dependencies
by
shepherl
4.1k
Since `BiocManager::install` is a wrapper around `install.packages` you should be able to use the dependencies argument. Default is the de…
Comment: For some reason I can't update BiocManager to 3.20
by
azm.ana2
• 0
Sorry i apologize for the delay. Thank you very much for the answer. I have two supervisers and the one who knows about the computer is com…
Votes
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
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