Bioconductor Offtopic

Showing : offtopic • reset

votes

replies

211

views

bug graper offtopic

updated 10 days ago by shepherl 4.1k • written 10 days ago by Bjarne • 0

votes

views

BUScorrect offtopic

updated 12 weeks ago by shepherl 4.1k • written 12 weeks ago by 2zrcj3448p 0

votes

replies

1.2k

views

RNA-Seq sequencer library_size sequency_depth multiplexing offtopic

updated 22 months ago by James W. MacDonald 68k • written 22 months ago by FedeXandeR • 0

vote

replies

984

views

mygene offtopic

updated 2.1 years ago by James W. MacDonald 68k • written 2.1 years ago by Shila • 0

vote

replies

1.1k

views

derfinderData SpikeInSubset musicatk Guitar offtopic

updated 2.3 years ago by Marcel Ramos 700 • written 2.3 years ago by Chanchal • 0

vote

replies

1.8k

views

Rscript tidyr dataframe tidyverse offtopic

updated 2.6 years ago by Marcel Ramos 700 • written 2.6 years ago by Nikhil • 0

votes

1.2k

views

MicrobiomeData microbiome offtopic

updated 3.6 years ago by James W. MacDonald 68k • written 3.6 years ago by gwagz8 • 0

votes

2.3k

views

ChIPSeq SICER2 DiffBind MACS2 offtopic

updated 3.8 years ago by James W. MacDonald 68k • written 3.8 years ago by Yuan Tian ▴ 290

8 results • Page 1 of 1

Recent ...

Replies

Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Comment: concentration tables suitable as input for new packages? by wilkinson • 0

I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…

Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k

Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Hoover • 0

I got it! ([Drift Boss][1]) [1]: https://driftbossgame.co

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

Awards • All

Popular Question to Lluís Revilla Sancho ▴ 760