Bioconductor Offtopic

Showing : offtopic • reset

votes

views

BUScorrect offtopic

updated 6 weeks ago by shepherl 4.1k • written 6 weeks ago by 2zrcj3448p 0

votes

replies

1.2k

views

RNA-Seq sequencer library_size sequency_depth multiplexing offtopic

updated 20 months ago by James W. MacDonald 67k • written 20 months ago by FedeXandeR • 0

vote

replies

946

views

mygene offtopic

updated 24 months ago by James W. MacDonald 67k • written 24 months ago by Shila • 0

vote

replies

1.1k

views

derfinderData SpikeInSubset musicatk Guitar offtopic

updated 2.2 years ago by Marcel Ramos 700 • written 2.2 years ago by Chanchal • 0

vote

replies

1.6k

views

Rscript tidyr dataframe tidyverse offtopic

updated 2.5 years ago by Marcel Ramos 700 • written 2.5 years ago by Nikhil • 0

votes

1.2k

views

MicrobiomeData microbiome offtopic

updated 3.5 years ago by James W. MacDonald 67k • written 3.5 years ago by gwagz8 • 0

votes

2.2k

views

ChIPSeq SICER2 DiffBind MACS2 offtopic

updated 3.7 years ago by James W. MacDonald 67k • written 3.7 years ago by Yuan Tian ▴ 290

7 results • Page 1 of 1

Recent ...

Replies

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Comment: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

I think I explained what the differences between approach 1 and 2 is in my answer. I assume that the tutorial uses vst because it is varian…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

Thank you ATpoint for your responses. I am a bit confused because the difference between the two approaches is the selection of the genes…

Votes

Bioconductor Course, Kenya 2025: Applications Open!

Comment: can't install tscR

Answer: Csaw normalization strategies - general inquiry

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Awards • All