Bioconductor Offtopic

Showing : offtopic • reset

votes

replies

232

views

bug graper offtopic

updated 23 days ago by shepherl 4.1k • written 23 days ago by Bjarne • 0

votes

views

BUScorrect offtopic

updated 3 months ago by shepherl 4.1k • written 3 months ago by 2zrcj3448p 0

votes

replies

1.2k

views

RNA-Seq sequencer library_size sequency_depth multiplexing offtopic

updated 22 months ago by James W. MacDonald 68k • written 22 months ago by FedeXandeR • 0

vote

replies

989

views

mygene offtopic

updated 2.1 years ago by James W. MacDonald 68k • written 2.1 years ago by Shila • 0

vote

replies

1.2k

views

derfinderData SpikeInSubset musicatk Guitar offtopic

updated 2.4 years ago by Marcel Ramos 700 • written 2.4 years ago by Chanchal • 0

vote

replies

1.8k

views

Rscript tidyr dataframe tidyverse offtopic

updated 2.6 years ago by Marcel Ramos 700 • written 2.6 years ago by Nikhil • 0

votes

1.2k

views

MicrobiomeData microbiome offtopic

updated 3.7 years ago by James W. MacDonald 68k • written 3.7 years ago by gwagz8 • 0

votes

2.3k

views

ChIPSeq SICER2 DiffBind MACS2 offtopic

updated 3.8 years ago by James W. MacDonald 68k • written 3.8 years ago by Yuan Tian ▴ 290

8 results • Page 1 of 1

Recent ...

Replies

Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

Awards • All