Bioconductor Organismdb

Showing : organismdb • reset

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1.7k

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OrganismDb AnnotationForge

6 months ago Ozan • 0

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1.8k

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clusterProfiler OrganismDb

updated 13 months ago by Guido Hooiveld ★ 4.1k • written 13 months ago by Aastha Kapoor • 0

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AnnotationForge OrganismData OrganismDb

18 months ago abhisek001 • 0

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annotation organismdb

updated 8.3 years ago by Martin Morgan 25k • written 8.3 years ago by Guido Hooiveld ★ 4.1k

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annotationhub organismdb orgdb unsupported organisms

updated 8.9 years ago by Valerie Obenchain ★ 6.8k • written 8.9 years ago by Guido Hooiveld ★ 4.1k

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promoter granges refseq ucsc organismdb

updated 9.1 years ago by Robert Castelo ★ 3.4k • written 9.1 years ago by efoss ▴ 10

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2.7k

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GO OrganismDb ggbio GO OrganismDb ggbio

updated 10.0 years ago by dalloliogm ▴ 50 • written 10.4 years ago by Georg Otto ▴ 120

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annotationdbi annotation organismdb loadnamespace

10.1 years ago milorobertsmith • 0

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go annotation organismdb

updated 10.2 years ago by James W. MacDonald 67k • written 10.2 years ago by Guido Hooiveld ★ 4.1k

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organismdb annotationdbi annotationforge

updated 10.3 years ago by Marc Carlson ★ 7.2k • written 10.3 years ago by artur ▴ 80

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome MEDIPS

updated 11.0 years ago by Matthias Lienhard ▴ 280 • written 11.0 years ago by Hervé Pagès 16k

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome GO

11.0 years ago Hervé Pagès 16k

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GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS

11.0 years ago Hervé Pagès 16k

13 results • Page 1 of 1

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Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Answer: EuroBioC2023 abstract submission closing soon! by excess.gecko.shso • 0

Don't miss out! EuroBioC2023 abstract submissions are nearing the deadline. Sharpen your scientific [Wordle Game][1] skills and submit your…

Answer: EuroBioC2024 abstract submission is open! by excess.gecko.shso • 0

EuroBioC2024 abstract submissions are now open! Join the Oxford conference from Sep 4-6. Submit your abstract by April 26 for short talks, …

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Votes

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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