Bioconductor Organismdb

Showing : organismdb • reset

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2.4k

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OrganismDb AnnotationForge

15 months ago • updated 14 months ago Ozan • 0

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clusterProfiler OrganismDb

updated 21 months ago by Guido Hooiveld ★ 4.1k • written 21 months ago by Aastha Kapoor • 0

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AnnotationForge OrganismData OrganismDb

2.2 years ago abhisek001 • 0

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annotation organismdb

updated 9.0 years ago by Martin Morgan 25k • written 9.0 years ago by Guido Hooiveld ★ 4.1k

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annotationhub organismdb orgdb unsupported organisms

updated 9.6 years ago by Valerie Obenchain ★ 6.8k • written 9.6 years ago by Guido Hooiveld ★ 4.1k

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promoter granges refseq ucsc organismdb

updated 9.8 years ago by Robert Castelo ★ 3.4k • written 9.8 years ago by efoss ▴ 10

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2.9k

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GO OrganismDb ggbio GO OrganismDb ggbio

updated 10.7 years ago by dalloliogm ▴ 50 • written 11.0 years ago by Georg Otto ▴ 120

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annotationdbi annotation organismdb loadnamespace

10.8 years ago milorobertsmith • 0

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go annotation organismdb

updated 10.9 years ago by James W. MacDonald 68k • written 10.9 years ago by Guido Hooiveld ★ 4.1k

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organismdb annotationdbi annotationforge

updated 10.9 years ago by Marc Carlson ★ 7.2k • written 10.9 years ago by artur ▴ 80

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome MEDIPS

updated 11.7 years ago by Matthias Lienhard ▴ 280 • written 11.7 years ago by Hervé Pagès 16k

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2.3k

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome GO

11.7 years ago Hervé Pagès 16k

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2.4k

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GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS

11.7 years ago Hervé Pagès 16k

13 results • Page 1 of 1

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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

Votes

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

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