Bioconductor Organismdb

Showing : organismdb • reset

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787

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clusterProfiler OrganismDb

updated 4 months ago by Guido Hooiveld ★ 3.9k • written 4 months ago by Aastha Kapoor • 0

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946

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AnnotationForge OrganismData OrganismDb

10 months ago abhisek001 • 0

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1.2k

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annotation organismdb

updated 7.7 years ago by Martin Morgan 25k • written 7.7 years ago by Guido Hooiveld ★ 3.9k

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2.6k

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annotationhub organismdb orgdb unsupported organisms

updated 8.2 years ago by Valerie Obenchain ★ 6.8k • written 8.3 years ago by Guido Hooiveld ★ 3.9k

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2.6k

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promoter granges refseq ucsc organismdb

updated 8.4 years ago by Robert Castelo ★ 3.3k • written 8.4 years ago by efoss ▴ 10

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2.5k

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GO OrganismDb ggbio GO OrganismDb ggbio

updated 9.4 years ago by dalloliogm ▴ 50 • written 9.7 years ago by Georg Otto ▴ 120

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3.9k

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annotationdbi annotation organismdb loadnamespace

9.5 years ago milorobertsmith • 0

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1.2k

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go annotation organismdb

updated 9.5 years ago by James W. MacDonald 65k • written 9.5 years ago by Guido Hooiveld ★ 3.9k

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2.1k

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organismdb annotationdbi annotationforge

updated 9.6 years ago by Marc Carlson ★ 7.2k • written 9.6 years ago by artur ▴ 80

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1.4k

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome MEDIPS

updated 10.4 years ago by Matthias Lienhard ▴ 240 • written 10.4 years ago by Hervé Pagès 16k

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1.9k

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome GO

10.4 years ago Hervé Pagès 16k

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2.1k

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GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS

10.4 years ago Hervé Pagès 16k

12 results • Page 1 of 1

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length