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pasilla
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reset
1
vote
3
replies
1.6k
views
Unable to reproduce Pasilla dataset which fresh instalation
tutorial
DESeq2
pasilla
4.5 years ago
Carina
• 0
1
vote
5
replies
2.0k
views
DESeq2: differential expression analysis from matrix count with gene annotation
deseq2
dataframe
pasilla
updated 6.3 years ago by
Michael Love
43k • written 6.3 years ago by
ecg1g15
▴ 30
1
vote
2
replies
2.8k
views
I can't install the pasilla package
pasilla
biocmanager
updated 6.7 years ago by
James W. MacDonald
68k • written 6.7 years ago by
Aurora
▴ 20
1
vote
2
replies
1.5k
views
trouble importing data for DEseq2 workflow
deseq2
tximport
tximportdata
pasilla
Tutorial
updated 6.8 years ago by
Michael Love
43k • written 6.8 years ago by
Stanley Yang
• 0
2
votes
2
replies
3.5k
views
DESeq2: resultsNames(dds): intercept
deseq2
pasilla
updated 8.0 years ago by
rrcutler
▴ 70 • written 8.0 years ago by
waquinon
• 0
0
votes
3
replies
2.7k
views
Difference between DESeq2 package version 1.16.1 and 1.14.1
deseq2
pasilla
updated 8.1 years ago by
Michael Love
43k • written 8.1 years ago by
jingjiaok
• 0
1
vote
2
replies
3.3k
views
DESeq - Change PCA axis from PasillaGuide to PC3 and PC4
deseq
pca
pasilla
updated 9.4 years ago by
Federico Marini
▴ 180 • written 9.4 years ago by
chqr
• 0
7 results • Page
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Recent ...
Replies
Comment: (Why) do limma's confidence intervals depend on topTable's p.value argument?
by
sandmann.t
▴ 70
Thank you so much for the fast reply and the immediate fix!
Answer: (Why) do limma's confidence intervals depend on topTable's p.value argument?
by
Gordon Smyth
52k
Thanks for the reproducible example. Definitely a bug. Should not depend on `p.value`. The CIs with `p.value=1` are correct and those with …
Answer: muffz.plot2
by
James W. MacDonald
68k
The help page for `mfuzz.plot2` says ``` colo color palette to be used for plotting. If the color argument remains empty, the …
Comment: Feedback needed on new user-friendly BED file tool
by
James W. MacDonald
68k
This post does not fit the theme of this forum.
Comment: BiocManager::install() doesn't work
by
shepherl
4.2k
I'm not able to reproduce this yet. Can you provide your `sessionInfo()` and also what is the output of `BiocManager::repositories()` and…
Votes
Comment: Pre-filtering, adjusting independent filtering, or lfcthreshold() on DESeq2? Low
A: weird model design for DE analysis
Transcript expression analysis using EdgeR
Answer: Transcript expression analysis using EdgeR
Answer: Transcript expression analysis using EdgeR
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