Showing : tximportdata • reset
0
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4
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480
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Create count matrix from multible quant sf files from different directories
tximportData tximport salmon
3 months ago JG13 • 0
2
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9
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1.6k
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Importing RSEM processed data already formatted as a summarized experiment into DESeq2
tximport tximportData DESeq2
14 months ago Ndimensional ▴ 20
0
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2
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831
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tximport error in reading salmon output files?
tximport tximportData
updated 7 months ago by • 0 • written 14 months ago by • 0
2
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3
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1.5k
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Error while reading rsem files in tximport
DESeq2 tximport rsem RNASeq tximportData
21 months ago mohammedtoufiq91 ▴ 10
3
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3
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1.2k
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What is the correct way to import transcript abundances from 3' Quantseq results that calculated by kallisto?
tximport tximportData Quantseq kallisto
23 months ago • updated 22 months ago duhwa.lee • 0
0
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4
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1.3k
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Alternative for wininet method in tximeta
DESeq2 tximport tximportData tximeta
2.2 years ago uhlkatie • 0
2
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3
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1.1k
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Import RSEM output without sample data
DESeq2 tximportData tximport
updated 2.6 years ago by 42k • written 2.6 years ago by • 0
0
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3
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1.1k
views
tximport fails when RSEM output options produce files with additional columns?
DESeq2 tximportData tximpor
updated 3.2 years ago by 42k • written 3.2 years ago by • 0
0
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1
reply
951
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Multi-factor Analysis in DeSEQ2
tximport R tximportData RNASeq DESeq2
updated 3.3 years ago by 42k • written 3.3 years ago by • 0
0
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7
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1.9k
views
Problem with Tximport
tximportData tximport
3.6 years ago agoesmartini • 0
0
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1
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1.0k
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How to use tx import on output of abundance file
tximportData tximport
updated 3.8 years ago by ★ 4.0k • written 3.8 years ago by • 0
0
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4
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1.3k
views
Having a hard time creating a Txi object from an existing Salmon output file to convert transcript file to gene id TPM
Salmon tximport tximportdata ensembl
updated 4.4 years ago by 42k • written 4.4 years ago by • 0
1
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2
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1.1k
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What is the expected location of bootstrap samples relative to quant.sf file ?
tximport tximportdata salmon
5.9 years ago fcuy047 • 0
1
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2
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1.3k
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trouble importing data for DEseq2 workflow
deseq2 tximport tximportdata pasilla Tutorial
updated 5.9 years ago by 42k • written 5.9 years ago by • 0
1
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8
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34k
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How to create tx2gene.gencode.v27.csv
tximportdata
updated 6.2 years ago by 42k • written 6.2 years ago by • 0
2
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6
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1.8k
views
[DESeq2] Different results from tutorial
deseq2 tximportdata tximport
updated 6.3 years ago by 42k • written 6.3 years ago by • 0
0
votes
1
reply
2.5k
views
could not find function "tximport"
tximportdata
updated 6.5 years ago by 51k • written 6.5 years ago by ▴ 30
0
votes
9
replies
3.7k
views
Upgrade bioconductor 3.2 to 3.3
bioclIte tximportData
updated 6.6 years ago by ▴ 80 • written 8.2 years ago by ▴ 40
0
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3
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14k
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Problem installing tximportData
tximportdata
7.5 years ago elg • 0
3
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5
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2.8k
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txImport: a gene seems missing from the sample data
txImportData txImport
updated 3.6 years ago by 67k • written 7.5 years ago by • 0
0
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1
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1.8k
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How to remove genes with 0 counts in tximport?
tximport deseq tximportdata deseq2
updated 7.6 years ago by 42k • written 7.6 years ago by ▴ 10
0
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7
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1.8k
views
PCA results different from th same sample but different counting method
deseq2 pca tximportdata htseqcounts
updated 8.2 years ago by 42k • written 8.2 years ago by ▴ 40
22 results • Page 1 of 1
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Comment: SingleR Label.Ont by Stepah • 0
[Aussie Play][1] cares about its Australian players by offering a safe and secure gaming experience where there is never a dull moment. The…
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What aspect of ensemblVEP are you looking for? The vignette https://bioconductor.org/packages/release/bioc/vignettes/VariantAnnotation/in…
Answer: Help with design matrix for RNA-seq data using edgeR by Gordon Smyth 51k
This forum is intended to help with software usage and syntax rather than to answer research questions, and your question is a definitely a…
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by Michael Love 42k
DESeq2 has a way of fixing the reference pseudo-sample used for normalization. In estimateSizeFactors man page, you will see an argument g…
Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by Michael Love 42k
Sorry - I requested this to be posted here, I will answer.
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