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pasilla
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Unable to reproduce Pasilla dataset which fresh instalation
tutorial
DESeq2
pasilla
3.2 years ago
Carina
• 0
1
vote
5
replies
1.4k
views
DESeq2: differential expression analysis from matrix count with gene annotation
deseq2
dataframe
pasilla
updated 5.0 years ago by
Michael Love
41k • written 5.0 years ago by
ecg1g15
▴ 20
1
vote
2
replies
2.2k
views
I can't install the pasilla package
pasilla
biocmanager
updated 5.5 years ago by
James W. MacDonald
65k • written 5.5 years ago by
Aurora
▴ 20
1
vote
2
replies
1.2k
views
trouble importing data for DEseq2 workflow
deseq2
tximport
tximportdata
pasilla
Tutorial
updated 5.6 years ago by
Michael Love
41k • written 5.6 years ago by
Stanley Yang
• 0
2
votes
2
replies
2.9k
views
DESeq2: resultsNames(dds): intercept
deseq2
pasilla
updated 6.7 years ago by
rrcutler
▴ 70 • written 6.7 years ago by
waquinon
• 0
0
votes
3
replies
2.4k
views
Difference between DESeq2 package version 1.16.1 and 1.14.1
deseq2
pasilla
updated 6.9 years ago by
Michael Love
41k • written 6.9 years ago by
jingjiaok
• 0
1
vote
2
replies
2.9k
views
DESeq - Change PCA axis from PasillaGuide to PC3 and PC4
deseq
pca
pasilla
updated 8.2 years ago by
Federico Marini
▴ 150 • written 8.2 years ago by
chqr
• 0
7 results • Page
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Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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