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Showing :
peaks
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0
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1.1k
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FindOverlaps, makeVennDiagram and "others"
ATACSeq
peaks
ATAC
ChIPpeakAnno
19 months ago
Raghad
• 0
0
votes
0
replies
1.2k
views
Are broad/narrow peak comparable?
Peaks
MAC2
DiffBind
4.5 years ago
Yuan Tian
▴ 290
0
votes
4
replies
1.5k
views
nucleR ERROR unable to find an inherited method for function peakDetection for signature
nucleosome
peaks
error
Job
updated 6.1 years ago by
James W. MacDonald
68k • written 6.1 years ago by
anne.kannengiesser
• 0
2
votes
3
replies
3.7k
views
Counting reads in fixed width peaks with DiffBind::dba.count without re-centering?
diffbind
chipseq
counts
peaks
bedtools
updated 4.7 years ago by
Rory Stark
★ 5.2k • written 7.7 years ago by
Ni-Ar
▴ 10
3
votes
3
replies
5.3k
views
Error "if (is.na(peaks)) { : argument is of length zero " in DiffBind
diffbind
chipseq
peaks
dba
is.na
7.7 years ago
maria.kondili
▴ 10
1
vote
1
reply
1.9k
views
How do I know which peak to analyze?
bioconductor
annotation
peaks
updated 8.1 years ago by
Sean Davis
21k • written 8.1 years ago by
schaud24
▴ 10
6 results • Page
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Comment: Converting Probe IDs to HGNC symbols
by
Manav
▴ 10
ah thank u so much
Comment: Guitar R package requires update due to dependency GenomicFeatures
by
Sean Davis
21k
A great way to communicate such a nice troubleshooting and bug fix hint is to file an issue in github: https://github.com/lzcyzm/Guitar/iss…
Answer: Converting Probe IDs to HGNC symbols
by
Sean Davis
21k
The brainarray annotations are very confusing, as the IDs in the fData look like affymetrix probe IDs. To clarify, the brainarray project m…
Comment: How to do differential expresion across time serise with edgeR?
by
Gordon Smyth
53k
If you have fake replicates, then I think my code answers your question about how to run the edgeR time-course analysis. Regarding tutoria…
Comment: How to do differential expresion across time serise with edgeR?
by
petergrahamclark
▴ 10
The use case is kinetic model parameterisation. I'm actually a systems biologist not a bioinformatician. (which is why I'm struggling here)…
Votes
Answer: Converting Probe IDs to HGNC symbols
Converting Probe IDs to HGNC symbols
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?
A: limma-voom duplicateCorrelation once or twice, difference?
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
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