Showing : phd • reset
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
cancer bioinformatics proteomics genomics phd
17 months ago DKFZ International PhD Program ▴ 10
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730
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd cancer genomics proteomics bioinformatics
2.0 years ago DKFZ International PhD Program ▴ 10
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680
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Job: International PhD rotation students at FIMM-EMBL/DSHealth (University of Helsinki) in Molecular Medicine, Genomics, Bioinformatics, Neuroscience, Com…
ComputationalBiomedicine AI UniversityHelsinki PhD Bioinformatics
2.3 years ago Alyce • 0
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725
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Job: PhD student position: Vertebrate brain origins and evolution
PhD single-cell ComparativeGenomics evolution
2.5 years ago henrik.kaessmann • 0
1
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851
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Job: EU/UK funded PhD Studentship - Applying machine learning techniques to Next Generation Sequencing Big Data to improve Prostate Cancer patient outcome…
phd machine learning next generation sequencing prostate cancer Job
5.0 years ago Daniel Brewer ▴ 100
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Job: PhD Positions in Data Science and Bioinformatics at the German Cancer Research Center (DKFZ) in Heidelberg
data science bioinformatics PhD doctoral position Job
5.1 years ago DKFZ International PhD Program ▴ 10
1
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988
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Job: CRUK Cambridge Centre MRes + PhD in Cancer Biology (Cross-Programme Quantitative Projects)
PhD cancer deep learning computational biology Job
5.4 years ago Shamith.Samarajiwa ▴ 180
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890
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Job: PhD Positions in Computational Cancer Research at the German Cancer Research Center (DKFZ) in Heidelberg
phd computer science computational biology bioinformatics phd position Job
5.4 years ago DKFZ International PhD Program ▴ 10
1
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1.4k
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Job: UK/EU funded PhD Studentship: Detecting novel subtypes of cancer using data science and machine learning
PhD clustering cancer Job
6.3 years ago • updated 6.1 years ago Daniel Brewer ▴ 100
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1.2k
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Job: Applications are now invited for the FIMM-EMBL International PhD program
bioinformatics data science PhD Job
6.3 years ago gretchen.repasky ▴ 20
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Job: PhD and MSc positions at KAUST
job MSc PhD machine learning Job
6.6 years ago senaykafkas • 0
1
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2
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1.6k
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Job: PhD student positions in the areas of Bioinformatics, Computer Science and Biostatistics
job bioinformatician job phd Job
6.9 years ago Frank Kramer ▴ 60
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1.2k
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Job: Hunting for Human Infectious Agents in Cancer using data from Genomics England's 100,000 genome project : PhD Studentship @ UEA, Norwich
phd cancer pathogens NGS Job
7.0 years ago Daniel Brewer ▴ 100
1
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1.2k
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Job: Biomarker Data Analysis: Development of a Test for Prostate Cancer : PhD Studentship @ UEA, Norwich
phd cancer Job
7.0 years ago Daniel Brewer ▴ 100
3
votes
2
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1.4k
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Job: Hunting for Human Infectious Agents in Cancer using data from Genomics England's 100,000 genome project : PhD Studentship @ UEA, Norwich
PhD cancer genomics bacteria pathogens Job
7.2 years ago Daniel Brewer ▴ 100
1
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0
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1.3k
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Job: FIMM-EMBL International PhD program now accepting applications
bioinformatics molecular medicine PhD Job
7.3 years ago gretchen.repasky ▴ 20
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1.3k
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Job: PhD student positions in the areas of Bioinformatics, Computer Science and Biostatistics
bioinformatician job phd R pathways Job
7.4 years ago Frank Kramer ▴ 60
2
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0
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1.4k
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Job: PhD student positions in the areas of Bioinformatics, Computer Science and Biostatistics
bioinformatician job job phd R pathways Job
7.6 years ago Frank Kramer ▴ 60
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0
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1.4k
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Job: 2015 Movember Foundation PhD Studentship in Bioinformatics @ UEA, Norwich, UK
Phd NGS cancer prostate Job
8.2 years ago Daniel Brewer ▴ 100
19 results • Page 1 of 1
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Comment: PCA plot suggestions by JKim • 0
cross post: https://www.biostars.org/p/9593486/
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by James W. MacDonald 65k
You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
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