Showing : phylogenetic • reset
9
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8
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6.7k
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News: new package `ggtree` in devel branch
ggtree phylogenetic News
updated 9.2 years ago by ▴ 10 • written 9.3 years ago by ★ 1.2k
1
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2
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1.3k
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accounting for phylogenetic non-independence in differential expression analysis
edger differential expression phylogenetic comparative methods
updated 6.8 years ago by ★ 28k • written 6.8 years ago by ▴ 10
0
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1
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1.3k
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R slow, using all physical memory and 20GB Virt
linux r phylogenetic computational biology
updated 8.9 years ago by 16k • written 8.9 years ago by • 0
0
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1
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1.5k
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package ‘MAcroCAIC’ is not available (for R version 3.1.2)
phylogenetic MacroCAIC
updated 8.3 years ago by ★ 28k • written 8.3 years ago by • 0
0
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1
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1.0k
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How to draw phylogeny tree for long genomes? ('msa' taking much time)
msa phylogenetic
updated 7.4 years ago by ▴ 290 • written 7.4 years ago by ▴ 50
0
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1
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1.9k
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ggtree: time-scaled tree s
phylogenetic ggtree calibration fossils times-scale
updated 6.7 years ago by ★ 1.2k • written 6.7 years ago by • 0
0
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0
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794
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msa output formats for use down stream to create phylogenetic trees
R bioconductor phylogenetic
6.0 years ago cav3gh • 0
0
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1
reply
684
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
TreeSummarizedExperiment phylogenetic microbiome SummarizedExperiment
updated 19 months ago by 65k • written 19 months ago by • 0
0
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1
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3.6k
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ape - delete bootstrap values (node.labels) less than a certain value
ape bootstrap node phylogenetic tree
8.9 years ago wd ▴ 30
9 results • Page 1 of 1
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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0
Intent to delete when going home. Sorry for that!
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…
Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0
Thanks Gordon for the advice!
Votes
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
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