Showing : plotCounts • reset
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PlotCounts DESeq2 - how to plot count s for specific samples?
DESeq2 PlotCounts
2.8 years ago annamariabugaj ▴ 10
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plotCounts to visualize variations of a specific genes along conditions
DESeq2 plotCounts vst
updated 3.1 years ago by 43k • written 3.1 years ago by ▴ 10
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2
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How to plot gene counts using plotCounts() with just an individual contrast?
DESeq2 plotCounts
updated 4.6 years ago by 43k • written 4.6 years ago by • 0
0
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1
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1.4k
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Deseq2 how to get input data for plotCounts for a single gene
deseq2 plotcounts
updated 5.6 years ago by 43k • written 5.6 years ago by • 0
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plot statistic values in a DEseq2 plotCounts plot
deseq2 plotCounts pvalues RNAseq
updated 5.9 years ago by 43k • written 5.9 years ago by • 0
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Change order of conditions when plotting: plotCounts {DESeq2}
R deseq2 plotcounts
6.6 years ago ecg1g15 ▴ 30
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Error DESeq2 plotCounts invalid class DESeqDataSet object undefined class for slot rowRanges GenomicRangesORGRangesList
deseq2 plotCounts rowRanges
updated 7.3 years ago by 43k • written 7.3 years ago by ▴ 50
7 results • Page 1 of 1
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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release by Jeroen ▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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