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plotCounts
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PlotCounts DESeq2 - how to plot count s for specific samples?
DESeq2
PlotCounts
15 months ago
annamariabugaj
▴ 10
1
vote
4
replies
1.7k
views
plotCounts to visualize variations of a specific genes along conditions
DESeq2
plotCounts
vst
updated 19 months ago by
Michael Love
42k • written 19 months ago by
Laia
▴ 10
0
votes
2
replies
1.5k
views
How to plot gene counts using plotCounts() with just an individual contrast?
DESeq2
plotCounts
updated 3.1 years ago by
Michael Love
42k • written 3.1 years ago by
elizabethe819
• 0
0
votes
1
reply
978
views
Deseq2 how to get input data for plotCounts for a single gene
deseq2
plotcounts
updated 4.1 years ago by
Michael Love
42k • written 4.1 years ago by
sunthomas
• 0
0
votes
1
reply
1.3k
views
plot statistic values in a DEseq2 plotCounts plot
deseq2
plotCounts
pvalues
RNAseq
updated 4.4 years ago by
Michael Love
42k • written 4.4 years ago by
anne.hoffrichter
• 0
0
votes
3
replies
2.1k
views
Change order of conditions when plotting: plotCounts {DESeq2}
R
deseq2
plotcounts
5.1 years ago • updated 5.0 years ago
ecg1g15
▴ 20
0
votes
5
replies
1.4k
views
Error DESeq2 plotCounts invalid class DESeqDataSet object undefined class for slot rowRanges GenomicRangesORGRangesList
deseq2
plotCounts
rowRanges
updated 5.8 years ago by
Michael Love
42k • written 5.8 years ago by
I.Castanho
▴ 50
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Comment: ChAMP not available for bioconductor 3.19
by
Macsue
• 0
Warning message:package ChAMP is not available for Bioconductor version 3.19 A version of this package for your version of R might be avail…
Comment: ChAMP not available for bioconductor 3.19
by
Macsue
• 0
> if (!require("BiocManager", quietly = TRUE)) + install.packages("BiocManager") Bioconductor version 3.19 (BiocManager 1.30.23), R 4.4…
Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2
by
BioinfGuru
▴ 30
I would use biomaRt. This is what happens when annotation occurs to early. If possible I would run the DEG analysis on the original output…
Comment: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★ 4.2k
My comment was generic. If your experiment causes drastic shifts then the situation might be different. The advise is the same: Try to use …
Comment: conumee with Infinium MethylationEPIC v2.0
by
Maximus
• 0
Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…
Votes
A: Analyzing data without replicates using DiffBind
A: Analyzing data without replicates using DiffBind
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
DESeq2 swap ensembl gene id rownames with gene symbol column
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
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