Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
plotMA
•
reset
1
vote
8
replies
2.6k
views
How to exactly replicate the results from plotMA in DESeq2 ?
deseq2
plotma
6.6 years ago
Yvan Wenger
▴ 50
1
vote
5
replies
626
views
Mixed up sample info with plotPCA
plotMA
ggplot2
plotPCA
DESeq2
updated 7 months ago by
Michael Love
41k • written 7 months ago by
sara.jacobson
• 0
3
votes
5
replies
3.7k
views
limma::plotMA displays one sample vs. others
limma
plotMA
updated 8.7 years ago by
Gordon Smyth
50k • written 8.7 years ago by
Lisa Cohen
▴ 50
1
vote
3
replies
1.1k
views
plotMA (DESeq2) Issue
deseq2
plotMA
rnaseq
logfoldchange
updated 6.2 years ago by
Michael Love
41k • written 6.2 years ago by
ap_vc21
• 0
4
votes
3
replies
2.4k
views
[DESeq2] normalization doesn't remove my mean-variance trend
normalization
deseq2
plotMA
meanSDplot
8.7 years ago
aravenscraft
• 0
1
vote
2
replies
961
views
Why does backgroundCorrect with method="none" produce different plots with plotMA()?
agilent
single channel
plotMA
background correction
updated 5.9 years ago by
Gordon Smyth
50k • written 5.9 years ago by
CantExitVIM
▴ 10
0
votes
2
replies
4.8k
views
PlotMA Filters for DeSEQ2 ; adjusting script
deseq2
rnaseq
plotMA
deseq
rna-seq
updated 8.1 years ago by
Michael Love
41k • written 8.1 years ago by
sjs0282
• 0
1
vote
1
reply
4.9k
views
MA plot in R
rstudio
r
plotMA
6.9 years ago
g.k
• 0
0
votes
1
reply
889
views
What does an asymmetrical MA plot indicate and how do I know if it means I've made an error?
deseq2
plotMA
rnaseq
community analysis
asymmetry
updated 4.2 years ago by
Michael Love
41k • written 4.2 years ago by
chaco001
• 0
1
vote
1
reply
621
views
plotMA difference using or not a sub matrix
matrixsubset
DESeq2
plotMA
updated 3.0 years ago by
Michael Love
41k • written 3.0 years ago by
l.troxler
▴ 10
10 results • Page
1 of 1
Recent ...
Replies
Answer: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
This has been asked before, but with a multi factor design, the LFC for coefficient X adjust for the others, in a way that is often hard to…
Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
James W. MacDonald
65k
You don't say what array that is, so I will guess. ``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame…
Answer: SGSeq: moving toward diffex from SGSeq analysis
by
Leonard Goldstein
▴ 200
`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…
Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
• 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Votes
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
Awards
• All
Popular Question
to
Ian D.
▴ 70
Popular Question
to
junhui.li11
• 0
Scholar
to
James W. MacDonald
65k
Popular Question
to
jeffrey.maurer
• 0
Centurion
to
Chris
• 0
Locations
• All
United States,
1 minute ago
Worcester,
5 minutes ago
Italy,
21 minutes ago
United States,
37 minutes ago
India,
1 hour ago
Traffic: 612 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6