Bioconductor Predict coding

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variantannotation predict coding locateVariants granges

7.4 years ago tony j • 0

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1.2k

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predict coding variantannotation

updated 9.6 years ago by Valerie Obenchain ★ 6.8k • written 9.6 years ago by luong.jeff • 0

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snp variantannotation predict coding

9.8 years ago vakul.mohanty ▴ 20

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variantannotation predict coding

updated 10.0 years ago by Valerie Obenchain ★ 6.8k • written 10.0 years ago by Miss Agnieszka Aleksandra Golicz ▴ 40

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1.8k

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vcf predict coding save file VariantAnnotation

updated 10.5 years ago by Thomas Sandmann ▴ 90 • written 10.5 years ago by anastasiya-terskih ▴ 10

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Comment: Support of parquet files for on-disk Bioconductor objects by btom66245 • 0

@[doodle jump][1] I encountered the exact same problem on both Mac and Windows. Thank you for your sharing. [1]: https://doodlejump24.…

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0

I am not sure this has anything to do with it but i had to run the following as tximport wouldn't allow me to import abundance_1.h5 files t…

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0

1 2 3 Error in H5Dclose(h5dataset) : HDF5. Dataset. Unable to decrement reference count. ``` > traceback() 5: H5Dclose(h5dataset) 4: rhd…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by wuwenhui2 • 0

Thanks, I figured it out.

Comment: Design Matrix with paired and independent samples plus RUVg Spike-in normalizati by Mei • 0

I have a similar experiment with 7 paired samples (T0 and T1) in each of 4 outcome groups. I am using RUVr combined with limma-voom, so I a…

Votes

what the test method for enrichGO in clusterProfiler?

A: single-cells RNA-seq analysis by MAST with unbalanced group size

Comment: plyranges: find exact GRanges match keeping metadata columns

Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran

Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?

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