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predict coding
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predictCoding errors with: sequence ^1$ not found
variantannotation
predict coding
locateVariants
granges
7.0 years ago
tony j
• 0
0
votes
2
replies
1.1k
views
predictCoding with multiple samples
predict coding
variantannotation
updated 9.2 years ago by
Valerie Obenchain
★ 6.8k • written 9.2 years ago by
luong.jeff
• 0
0
votes
1
reply
1.4k
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trouble with predictCoding( function
snp
variantannotation
predict coding
9.4 years ago
vakul.mohanty
▴ 20
1
vote
10
replies
2.6k
views
predictCoding error DNAStringSet_translate
variantannotation
predict coding
updated 9.6 years ago by
Valerie Obenchain
★ 6.8k • written 9.6 years ago by
Miss Agnieszka Aleksandra Golicz
▴ 40
4
votes
3
replies
1.7k
views
how to save file on local disk after applying predictCoding() function?
vcf
predict coding
save file
VariantAnnotation
updated 10.1 years ago by
Thomas Sandmann
▴ 90 • written 10.1 years ago by
anastasiya-terskih
▴ 10
5 results • Page
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Comment: Question about using LRT test for time course experiments with DESeq2
by
Denise
• 0
Not really, we are testing some toxic compounds to identify genes that are activated in response to the toxic exposure. Genes that change o…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Hi again, Thank you for the response! Can you expound on why it is not a good idea? I realize that the expression levels/differential expr…
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
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James W. MacDonald
67k
No, that's not a good idea at all. You should be doing a meta-analysis with these data rather than trying to combine like that. `GeneMeta` …
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Check the help page for `KEGGFrame`. Your columns are out of order.
Comment: Question about using LRT test for time course experiments with DESeq2
by
James W. MacDonald
67k
You are testing the interaction, so you are asking for those genes that change at any time *differently, depending on the treatment*. If co…
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Answer: DecideTest vs topTAGs in edgeR
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
Answer: DESeq Input from Salmon + tximport/tximeta
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