Showing : predict coding • reset
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predictCoding errors with: sequence ^1$ not found
variantannotation predict coding locateVariants granges
7.8 years ago tony j • 0
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predictCoding with multiple samples
predict coding variantannotation
updated 10.0 years ago by ★ 6.8k • written 10.0 years ago by • 0
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trouble with predictCoding( function
snp variantannotation predict coding
10.2 years ago vakul.mohanty ▴ 20
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predictCoding error DNAStringSet_translate
variantannotation predict coding
updated 10.4 years ago by ★ 6.8k • written 10.4 years ago by ▴ 40
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how to save file on local disk after applying predictCoding() function?
vcf predict coding save file VariantAnnotation
updated 10.9 years ago by ▴ 90 • written 10.9 years ago by ▴ 10
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Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ATpoint ★ 4.9k
No, cells from the same donor are correlated due to the donor effect. There is literature on this you should read to get started. https:/…
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by Raya • 0
Wouldn't each sample in the single cell rna seq act as a biological replicate? each condition (eg: mab3_20C) has ~70 single cell samples.
Comment: Getting way too many DEGs with LRT for time-series RNA-seq! by James W. MacDonald 68k
>Sequential post-exposure measurements of the same set of genes is not the same thing as having multiple treated groups! They are not the…
Comment: Getting way too many DEGs with LRT for time-series RNA-seq! by Denise • 0
Sequential post-exposure measurements of the same set of genes is not the same thing as having multiple treated groups! And I suppose ther…
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ATpoint ★ 4.9k
There is no biological replication here. This is not supported by DESeq2 (or mos credible statistical tools). You would need different dono…
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Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations
Answer: Are voomByGroup and voomLmFit compatible?
Answer: p-adjusted values in multiple comparisons
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