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predict coding
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predictCoding errors with: sequence ^1$ not found
variantannotation
predict coding
locateVariants
granges
6.5 years ago
tony j
• 0
0
votes
2
replies
1.0k
views
predictCoding with multiple samples
predict coding
variantannotation
updated 8.7 years ago by
Valerie Obenchain
★ 6.8k • written 8.7 years ago by
luong.jeff
• 0
0
votes
1
reply
1.3k
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trouble with predictCoding( function
snp
variantannotation
predict coding
8.9 years ago
vakul.mohanty
▴ 20
1
vote
10
replies
2.3k
views
predictCoding error DNAStringSet_translate
variantannotation
predict coding
updated 9.1 years ago by
Valerie Obenchain
★ 6.8k • written 9.1 years ago by
Miss Agnieszka Aleksandra Golicz
▴ 40
4
votes
3
replies
1.5k
views
how to save file on local disk after applying predictCoding() function?
vcf
predict coding
save file
VariantAnnotation
updated 9.6 years ago by
Thomas Sandmann
▴ 90 • written 9.6 years ago by
anastasiya-terskih
▴ 10
5 results • Page
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Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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