Showing : probe to gene id • reset
5
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2
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9.1k
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Probe to gene id conversion
annotate biomart probe to gene id
updated 8.3 years ago by 62k • written 8.3 years ago by ▴ 20
2
votes
3
replies
1.5k
views
Why are there so many not annotated probes in the PorGene-1_1-st affymetrix array?
affymetrix microarrays pd.porgene.1.1.st annotation probe to gene id pathway analysis
updated 7.0 years ago by 62k • written 7.0 years ago by ▴ 60
1
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3
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1.1k
views
beadchip annotation data missing gene "names"
probe to gene id illumina beadchip probe quality
updated 6.8 years ago by 62k • written 6.8 years ago by • 0
1
vote
4
replies
886
views
Methylation EPIC annotation - the logFC values represented as boxplots
probe to gene id logFC illuminahumanmethylationepicanno.ilm10b2.hg19 limma contrast matrix
updated 4.8 years ago by 62k • written 4.8 years ago by • 0
4 results • Page 1 of 1
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Answer: msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spect by thomas.nigel.lawson • 0
This has been resolved (Windows Firewall issue) - see github issue https://github.com/computational-metabolomics/msPurity/issues/100
Answer: DESeq2 parameter infernce by Michael Love 39k
We use IRLS which is related to Newton-Raphson method. I suppose you can use any optimization method you prefer. We also sometimes use L-BF…
Answer: DESeq2 with 2 continuous factors, LRT, coeficients and slope by Michael Love 39k
See `?results` which describes what the LFC is when you perform an LRT: "*For analyses using the likelihood ratio test*..." Also in the …
Answer: DESeq2 with sample effect, unequal sample sizes by Michael Love 39k
For statistical analysis plans such as design and coefficient interpretation, I recommend collaborating with a local statistician or someon…
Comment: Bioconductor tool for curating annotations? by Lluís Revilla Sancho ▴ 700
I think you can find those transcripts not overlapping with a GRanges object easily via ?GenomicRanges::setdiff, but I don't know how to an…
Votes
Answer: AnnotationForge::makeOrgPackage "argument is missing, with no default" Errors
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Answer: Limma-voom with inverse probability weights
A: Limma-voom with external observation weights
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Scholar to Mike Smith ★ 5.9k
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