Showing : probe • reset
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2
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Using Affymetrix PM chips with Bioconductor
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
updated 16.6 years ago by ★ 1.2k • written 16.6 years ago by ▴ 20
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[R] Need to build package for Affy HT HG-U133+ PM arrays
Annotation GO cdf probe affy pdInfoBuilder Annotation GO cdf probe affy pdInfoBuilder
16.7 years ago James W. MacDonald 68k
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5
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2.0k
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question about heatmap.2
probe probe
updated 16.7 years ago by ▴ 80 • written 16.7 years ago by ▴ 100
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1
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1.4k
views
cdf and probe for HT HG-U133+ PM Array Plate
cdf probe cdf probe
updated 16.7 years ago by ★ 3.9k • written 16.7 years ago by ▴ 40
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Limma duplicateCorrelation question: how to handle both on-chip and between chip technical replicates?
probe probe
16.7 years ago Joseph Fass ▴ 70
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7
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2.6k
views
ragene10st
Annotation GO Rattus norvegicus ChipName cdf probe affy AnnotationDbi AffyCompatible GO
updated 16.7 years ago by ▴ 630 • written 16.7 years ago by ▴ 370
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Bioconductor Digest, Vol 73, Issue 8
Microarray Annotation GO hgu133plus2 probe biomaRt flowViz exonmap Microarray Annotation
16.7 years ago ramesh aathe ▴ 10
0
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850
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reading probe ID file
Microarray probe Microarray probe
16.7 years ago kuntal worah ▴ 30
0
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1
reply
859
views
LIMMA, behaviour of 'lmFit': warnings
probe limma probe limma
updated 16.7 years ago by ★ 1.9k • written 16.7 years ago by 53k
1
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RmiR, request for new package
miRNA Annotation GO cdf probe PROcess Category miRNA Annotation GO cdf probe PROcess
16.7 years ago Nishant Gopalakrishnan ▴ 340
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affyPLM QC vignette is missing...
probe Biobase affy gcrma matchprobes affyPLM probe Biobase affy gcrma matchprobes
16.7 years ago Jenny Drnevich ★ 2.0k
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1
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1.6k
views
Group-wise gcrma normalization
Microarray Normalization Clustering zebrafish probe gcrma Microarray Normalization probe
updated 16.7 years ago by ★ 6.5k • written 16.7 years ago by ▴ 30
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1.9k
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Mapping GO term ID to Illumina probe ID for Illumina gene expression data
GO probe GO probe
16.7 years ago Pan Du ★ 1.2k
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2
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1.1k
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Mapping GO term ID to Illumina probe ID for Illumina gene expression data
GO probe GO probe
updated 16.7 years ago by 21k • written 16.7 years ago by ▴ 640
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0
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MBNI Custom CDF Announcement
cdf probe Vega cdf probe Vega
16.7 years ago Manhong Dai ▴ 200
0
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948
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[Fwd: Reporting problem with annotation in biomaRt, Illumina arrays - correction]
Annotation probe biomaRt Annotation probe biomaRt
16.7 years ago Pan Du ★ 1.2k
0
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670
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Reporting problem with annotation in biomaRt, Illumina arrays - correction
Annotation probe biomaRt Annotation probe biomaRt
16.7 years ago Nenad Bartonicek ▴ 20
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5
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1.6k
views
xps rma() with HuGene-1_0-st-v1 on 64-bit architecture
Annotation Preprocessing probe oligo xps Annotation Preprocessing probe oligo xps
updated 16.7 years ago by ★ 3.9k • written 16.7 years ago by ▴ 270
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0
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869
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[Fwd: Reporting problem with annotation in biomaRt, Illumina arrays]
Annotation probe biomaRt Annotation probe biomaRt
16.7 years ago Wolfgang Huber ★ 13k
0
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913
views
Reporting problem with annotation in biomaRt, Illumina arrays
Annotation probe biomaRt Annotation probe biomaRt
16.7 years ago Nenad Bartonicek ▴ 80
0
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0
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1.3k
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qPCR 2009 Event Agenda Online
SNP qPCR Normalization Visualization Regression Cancer probe microRNA SNP qPCR Cancer
16.8 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
2
replies
1.1k
views
Problem using SQLForge for creating a custom annotation package
Annotation GO probe Annotation GO probe
updated 16.8 years ago by ★ 7.2k • written 16.8 years ago by ▴ 70
0
votes
1
reply
1.8k
views
SimpeAffy: how to get/generate qcdef file?
cdf probe affy simpleaffy cdf probe affy simpleaffy
updated 16.8 years ago by ▴ 30 • written 16.8 years ago by ▴ 170
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votes
0
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988
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replicate spots using dupcor in package limma
probe limma probe limma
16.8 years ago Kevin J Emerson ▴ 10
0
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0
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1.7k
views
GSEA to discover co-regulated genes
Transcription Annotation Pathways Infrastructure probe convert GSEABase Transcription
16.8 years ago Paul Geeleher ★ 1.3k
0
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5
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2.0k
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Newbie Illumina Probe Annotation (beadarray) Problem
Annotation probe PROcess beadarray Annotation probe PROcess beadarray
updated 16.8 years ago by ▴ 40 • written 16.8 years ago by ▴ 10
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3
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2.0k
views
Problem with RMA using pdInfoBuilder, oligo and limma
cdf probe affy limma pdInfoBuilder cdf probe affy limma pdInfoBuilder
16.8 years ago Anne-Marie Madore ▴ 30
0
votes
8
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2.1k
views
chipAlongChrom problem in Ringo
probe probe
updated 16.8 years ago by ▴ 730 • written 16.8 years ago by ▴ 890
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3
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1.1k
views
confused about mget with u133x3p.db and u133x3pALIAS2PROBE
probe convert probe convert
updated 16.8 years ago by ★ 7.2k • written 16.8 years ago by ▴ 350
0
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1
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1.4k
views
Help: LIMMA-decideTests and lfc option
probe probe
updated 16.8 years ago by ▴ 90 • written 16.8 years ago by 53k
0
votes
5
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2.0k
views
biomaRt and Ensembl probe set filter....
cdf probe affy graph limma biomaRt cdf probe affy graph limma biomaRt
updated 16.8 years ago by 68k • written 16.8 years ago by ▴ 110
0
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0
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944
views
Inf when using duplicateCorrelation
probe probe
16.8 years ago Gordon Smyth 53k
0
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0
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966
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About GEO submission of Illumina data
Annotation probe lumi Annotation probe lumi
16.8 years ago Pan Du ★ 1.2k
0
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0
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981
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Inf when using duplicateCorrelation - now with session info
GO probe GO probe
16.8 years ago Ingrid H. G. Østensen ▴ 700
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0
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925
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Inf when using duplicateCorrelation
probe probe
16.8 years ago Ingrid H. G. Østensen ▴ 700
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votes
4
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1.5k
views
Normalizing after MAS 5.0
Normalization probe affy Normalization probe affy
updated 16.8 years ago by 68k • written 16.8 years ago by ▴ 320
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votes
1
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1.7k
views
Creating Affymetrix CDF files
Annotation cdf probe Annotation cdf probe
updated 16.8 years ago by ★ 6.5k • written 16.8 years ago by ▴ 600
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votes
1
reply
1.3k
views
GCRMA: error / warning
probe gcrma probe gcrma
updated 16.8 years ago by ▴ 260 • written 16.8 years ago by ★ 4.1k
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0
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SAM warning
Biophysics Alignment Annotation Normalization Cancer hgu133plus2 probe affy vsn MBCB vsn
16.8 years ago elliot harrison ▴ 230
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2
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1.4k
views
Creating Affymetrix CDF files
cdf probe makecdfenv convert cdf probe makecdfenv convert
updated 16.8 years ago by ★ 6.5k • written 16.8 years ago by ▴ 20
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0
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957
views
(no subject)
Microarray Normalization GO probe vsn limma Microarray Normalization GO probe vsn limma
16.8 years ago Gordon Smyth 53k
0
votes
0
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1.1k
views
multiple locations for probeset in hgu133plus2CHRLOC vs. UCSC PSL data
Alignment Annotation Cancer hgu133plus2 probe affy Biostrings Alignment Annotation Cancer
16.8 years ago rgentleman ★ 5.5k
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votes
1
reply
1.6k
views
Request for the assistance to use MEDME
Microarray Normalization Organism probe limma MEDME cycle ASSIGN Microarray Normalization
updated 16.8 years ago by ▴ 30 • written 16.8 years ago by ▴ 90
0
votes
1
reply
783
views
Problem with p-values calculated by eBayes
Microarray GO probe Microarray GO probe
16.8 years ago Chen, Zhuoxun ▴ 40
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votes
2
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1.2k
views
Problem with p-values calculated by eBayes--corrected format
Microarray GO probe Microarray GO probe
updated 16.8 years ago by ★ 6.5k • written 16.8 years ago by ▴ 40
0
votes
0
replies
899
views
Annotation and expression detection of Illumina microRNA expression prolifing panels
Annotation probe annotate microRNA Annotation probe annotate microRNA
16.8 years ago Jitao David Zhang ▴ 340
0
votes
0
replies
1.4k
views
NEW deadline - Talk & Poster Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe microRNA SNP qPCR Cancer
16.8 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
0
replies
1.2k
views
Fwd: RMA error in cdf environment with removed probes (Yeast2)
Yeast yeast2 cdf probe Yeast yeast2 cdf probe
16.8 years ago Omri Yahel ▴ 70
0
votes
2
replies
2.0k
views
Help with loading newly created custom annotation db into R session
Annotation GO GUI zebrafish probe Annotation GO GUI zebrafish probe
updated 16.9 years ago by 68k • written 16.9 years ago by ▴ 300
0
votes
1
reply
1.6k
views
Talk & Poster - Final Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe PROcess microRNA SNP qPCR
16.9 years ago qPCR Platform - the reference in real-t… ▴ 170
1,388 results • Page 14 of 28
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
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Answer: DESeq2 design for haplotype MPRA
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