Showing : probe • reset
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Fwd: analyzing HumanHT12 with lumi
Microarray Normalization probe lumi Microarray Normalization probe lumi
16.2 years ago amit mandal ▴ 140
0
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2
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1.4k
views
about citrus chip
probe affy gcrma probe affy gcrma
updated 16.2 years ago by 68k • written 16.2 years ago by ▴ 40
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1
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1.2k
views
Duplicate correlation error in limma
Microarray probe Microarray probe
updated 16.2 years ago by ★ 1.3k • written 16.2 years ago by 53k
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1.2k
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limma for identifying differentially expressed genes from illumina data
Microarray Normalization probe limma lumi Microarray Normalization probe limma lumi
16.2 years ago Wei Shi ★ 3.6k
0
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844
views
Different gcrma output values after upgrade BioC 2.0 -> 2.4
Microarray Normalization GO hgu133plus2 rgu34a probe gcrma Microarray Normalization GO
16.2 years ago Rullmann, J.A.C. Ton ▴ 40
0
votes
3
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1.3k
views
gcrma using deprecated package
probe matchprobes AnnotationDbi probe matchprobes AnnotationDbi
16.2 years ago Rullmann, J.A.C. Ton ▴ 40
0
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1
reply
867
views
Different gcrma output values after upgrade BioC 2.0 -> 2.4
probe gcrma probe gcrma
updated 16.2 years ago by ▴ 260 • written 16.2 years ago by ▴ 40
0
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1.1k
views
linear model for illumina Data(identifying differentially expressed genes)
Microarray probe limma Microarray probe limma
16.2 years ago Md.Mamunur Rashid ▴ 260
0
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1
reply
1.4k
views
pseudo median reference
probe probe
updated 16.2 years ago by 68k • written 16.2 years ago by ▴ 20
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4
replies
2.0k
views
Annotation Tools package
probe annotationTools probe annotationTools
updated 16.3 years ago by ▴ 20 • written 16.3 years ago by ▴ 20
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1.5k
views
LIMMA: Why does eBayes expression differ from observed?
Normalization Preprocessing probe vsn limma Normalization Preprocessing probe vsn limma
16.3 years ago Axel Klenk ★ 1.1k
0
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1.5k
views
Limma lmFit function and spot quality weights
Microarray probe affy limma Microarray probe affy limma
16.3 years ago Gordon Smyth 53k
0
votes
1
reply
3.0k
views
Mapping Agilent Probes
Microarray probe Microarray probe
updated 16.3 years ago by ▴ 40 • written 16.3 years ago by ▴ 300
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1.1k
views
Ensembl mart release 55: Useful information
Danio rerio Homo sapiens probe Danio rerio Homo sapiens probe
16.3 years ago Rhoda Kinsella ▴ 660
0
votes
1
reply
1.2k
views
HT HG-U133+ PM Array Plate: cdf and probe packages discrepancies
cdf probe cdf probe
updated 16.3 years ago by 68k • written 16.3 years ago by ▴ 20
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0
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1.2k
views
Question about inspecting splices indexes
Organism probe oneChannelGUI Organism probe oneChannelGUI
16.3 years ago raffaele calogero ▴ 500
0
votes
2
replies
1.8k
views
Differential expression ( Limma) for illumina microarrays?
Normalization probe limma Normalization probe limma
16.3 years ago Mohamed Lajnef ▴ 250
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2
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2.2k
views
how to create an affybatch
Normalization Regression hgu133a probe Normalization Regression hgu133a probe
16.3 years ago Venkat Sundar ▴ 30
0
votes
1
reply
1.2k
views
How to extract probe sequence and probe name info from bpmap files
probe probe
updated 16.3 years ago by ★ 2.3k • written 16.3 years ago by ▴ 30
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3
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1.6k
views
how to merge replicate spots?
probe limma probe limma
16.4 years ago Barbara Cegielska ▴ 200
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2
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1.2k
views
Filter before? Filter after? With maanova
Regression probe maanova Regression probe maanova
updated 16.4 years ago by ★ 5.5k • written 16.4 years ago by ★ 1.0k
0
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1
reply
1.3k
views
Missing Autocorrelation in Ringo
probe Ringo probe Ringo
updated 16.4 years ago by ▴ 450 • written 16.4 years ago by ▴ 80
0
votes
0
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947
views
Creating one matrix of intensity data from 4 diffrent CEL files
Normalization cdf probe affy BufferedMatrix Normalization cdf probe affy BufferedMatrix
16.4 years ago Radhika Ambatipudi ▴ 20
0
votes
0
replies
916
views
Does CRLMM uses mismatched features?
SNP probe crlmm SNP probe crlmm
16.4 years ago mcoyne@boninc.com ▴ 50
0
votes
2
replies
4.1k
views
Single channel data analysis with LIMMA
GO probe limma GO probe limma
updated 16.4 years ago by 21k • written 16.4 years ago by ▴ 20
0
votes
1
reply
1.6k
views
Annotation Tools package
GO mouse430a2 probe convert annotationTools GO mouse430a2 probe convert annotationTools
updated 16.4 years ago by ▴ 20 • written 16.4 years ago by ▴ 50
0
votes
4
replies
2.1k
views
GSEABase on none affy data/mapping problem(?)
Annotation GO Cancer probe affy Annotation GO Cancer probe affy
updated 16.4 years ago by 25k • written 16.4 years ago by ▴ 40
0
votes
1
reply
1.2k
views
problem with the structure of a list of pathways
Genetics Pathways probe annaffy Genetics Pathways probe annaffy
updated 16.4 years ago by 68k • written 16.4 years ago by ▴ 60
0
votes
1
reply
1.5k
views
help needed on avereps function
Normalization probe limma SANTA Normalization probe limma SANTA
updated 16.4 years ago by ▴ 250 • written 16.4 years ago by ★ 1.3k
0
votes
3
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1.1k
views
extracting character string
Microarray Annotation probe Microarray Annotation probe
updated 16.4 years ago by ★ 1.1k • written 16.4 years ago by ▴ 240
0
votes
2
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2.4k
views
GO terms for E. coli micro arrays (ecoliK12.db generation)
Annotation GO Yeast db0 probe topGO AnnotationDbi Annotation GO Yeast db0 probe topGO
updated 16.4 years ago by ★ 7.2k • written 16.4 years ago by ▴ 20
0
votes
0
replies
1.2k
views
onechannelGUI error
probe oneChannelGUI probe oneChannelGUI
16.5 years ago rcaloger ▴ 500
0
votes
1
reply
968
views
How can I get the normalized data for each probe before summarizing in oligo package?
Microarray probe Microarray probe
updated 16.5 years ago by ★ 2.3k • written 16.5 years ago by ▴ 10
0
votes
0
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1.1k
views
onechannelGUI error,
probe oneChannelGUI probe oneChannelGUI
16.5 years ago PJARES@clinic.ub.es ▴ 30
0
votes
0
replies
2.6k
views
comparing affymetrix and agilent microarray data
cdf probe affy cdf probe affy
16.5 years ago Jarek Bryk ▴ 110
0
votes
2
replies
1.6k
views
Nimblegen / Ringo / Preprocess error: inherits(myRG, "RGList") is not TRUE
Preprocessing Homo sapiens probe Ringo Preprocessing Homo sapiens probe Ringo
16.5 years ago JEAN-YVES SGRO ▴ 20
0
votes
1
reply
898
views
how to merge replicate spots
probe limma probe limma
updated 16.5 years ago by ★ 2.0k • written 16.5 years ago by ▴ 200
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votes
1
reply
1.1k
views
Further analysis after using MEDME?
probe probe
updated 16.5 years ago by ▴ 200 • written 16.5 years ago by ▴ 90
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votes
2
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1.2k
views
GO.db redundance
Annotation GO probe Category Annotation GO probe Category
updated 16.5 years ago by ★ 7.2k • written 16.5 years ago by ▴ 40
1
vote
3
replies
1.7k
views
how often are annotation packages updated (with respect to hgu133a.db and hgu133plus2.db)
Annotation hgu133a hgu133plus2 probe Annotation hgu133a hgu133plus2 probe
updated 16.5 years ago by ★ 6.5k • written 16.5 years ago by ▴ 350
0
votes
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1.1k
views
Bioconductor package to map probe set ids from one chip to another chip
Annotation GO Cancer hgu133a hgu95av2 probe Biostrings Annotation GO Cancer hgu133a
16.5 years ago Hervé Pagès 16k
0
votes
2
replies
1.4k
views
Probe IDs from Sentrix chips not appearing in Human annotation file
Annotation probe beadarray Annotation probe beadarray
updated 16.5 years ago by ★ 7.2k • written 16.5 years ago by ▴ 10
1
vote
4
replies
4.0k
views
avereps function
probe limma probe limma
16.5 years ago Erika Melissari ▴ 250
0
votes
9
replies
2.1k
views
Appropriate Probe annotation for HT-HGU133A chips
hgu133a hgu133plus2 cdf probe hgu133a hgu133plus2 cdf probe
updated 16.6 years ago by 68k • written 16.6 years ago by ▴ 30
0
votes
0
replies
1.1k
views
Differential anlaysis (limma)
Normalization probe limma beadarray Normalization probe limma beadarray
16.6 years ago Wei Shi ★ 3.6k
0
votes
12
replies
2.3k
views
Xps package : errors and RMA difference with Partek GS
Normalization probe xps Normalization probe xps
updated 16.6 years ago by ★ 3.9k • written 16.6 years ago by ▴ 110
0
votes
2
replies
2.3k
views
probe ID for affymetrix data
probe probe
updated 16.6 years ago by 68k • written 16.6 years ago by ▴ 40
0
votes
3
replies
1.4k
views
Sheep samples measured with a Affymetrix bovine array
Microarray probe Microarray probe
updated 16.6 years ago by ▴ 140 • written 16.6 years ago by ▴ 20
0
votes
0
replies
1.1k
views
visualization and alignment of affymetirx probe sequence to transcripts
Alignment probe Alignment probe
16.6 years ago shirley zhang ★ 1.0k
0
votes
0
replies
890
views
visualization and alignment of affymetirx probe sequence to transcripts
Alignment probe Alignment probe
16.6 years ago shirley zhang ★ 1.0k
1,388 results • Page 13 of 28
Recent ...
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Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi bioinffun, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to …
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction by Kevin Blighe ★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Answer: Streamlining the computing time for MiloDE p-value correction in large dataset? by Kevin Blighe ★ 4.0k
Hi Joseph, I agree with ATpoint's suggestion that pseudobulk aggregation (e.g., via aggregateData in scran or similar) would likely be f…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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