Showing : probe • reset
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2
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1.1k
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question about R package to get gene centric values
probe probe
updated 14.9 years ago by ★ 1.3k • written 14.9 years ago by ▴ 90
0
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0
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1.8k
views
PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
14.9 years ago Roman ▴ 20
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9
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3.5k
views
Conversion of affymetrix cell file to raw text file
Microarray probe ASSIGN Microarray probe ASSIGN
14.9 years ago viritha kaza ▴ 580
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0
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1.0k
views
Merging bioconductor lumi annotations with lumi output
Annotation probe lumi Annotation probe lumi
14.9 years ago Thomas Hampton ▴ 750
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0
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1.0k
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Merging bioconductor lumi annotations with lumi output
Annotation probe lumi Annotation probe lumi
14.9 years ago Pan Du ★ 1.2k
0
votes
1
reply
871
views
ToggleProbe() and Arabidopsis annotation file ath1121501.db.
ath1121501 probe AnnotationDbi ath1121501 probe AnnotationDbi
updated 14.9 years ago by ★ 7.2k • written 14.9 years ago by ▴ 60
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3
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1.3k
views
Xmapcore package: check a position whether it is in a probe or probeset.
probe xmapcore probe xmapcore
14.9 years ago Tim Yates ▴ 250
0
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0
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926
views
Xmapcore package: check a position whether it is in a probe or probeset.
probe xmapcore probe xmapcore
14.9 years ago Jinyan Huang ▴ 190
0
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2
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1.3k
views
Xmapcore package
probe probe
14.9 years ago Julie Zhu ★ 4.3k
0
votes
2
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2.0k
views
FW: PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
updated 14.9 years ago by ▴ 120 • written 14.9 years ago by ▴ 10
0
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1
reply
1.2k
views
ExonMap and xmap package question
probe limma convert exonmap probe limma convert exonmap
14.9 years ago Julie Zhu ★ 4.3k
0
votes
2
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2.1k
views
PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation cdf probe affy oligo xps DOSE Annotation cdf probe affy oligo xps DOSE
updated 14.9 years ago by ★ 4.3k • written 14.9 years ago by ▴ 120
0
votes
0
replies
1.3k
views
analysing NimbleGen CGH for CNV
aCGH probe aCGH snapCGH Ringo aCGH probe aCGH snapCGH Ringo
14.9 years ago Adeolu Adewoye ▴ 40
0
votes
2
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1.4k
views
Problems running oneChannelGUI
probe oneChannelGUI probe oneChannelGUI
updated 14.9 years ago by ▴ 910 • written 14.9 years ago by ▴ 200
1
vote
0
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4.0k
views
Calculating average expression value in limma topTable output
probe probe
14.9 years ago Sunny Srivastava ▴ 350
0
votes
0
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1.1k
views
Illumina data analysis using lumi
probe lumi probe lumi
15.0 years ago Pan Du ★ 1.2k
0
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0
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1.5k
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qPCR Event Calendar - winter 2010
SNP qPCR Genetics Normalization Clustering Regression Cancer Breast Xenopus laevis probe
15.0 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
10
replies
2.2k
views
Is GCRMA influenced by lexicographical order?
probe gcrma probe gcrma
updated 15.0 years ago by ★ 13k • written 15.0 years ago by ▴ 50
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votes
5
replies
1.8k
views
retrieve genes names after KEGG hypergeometric test
Annotation Pathways GO rat2302 probe affy Category Annotation Pathways GO rat2302 probe
updated 15.0 years ago by ▴ 930 • written 15.0 years ago by ▴ 230
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votes
0
replies
805
views
Help for calculating hybridization free energy using nearest neighbor model
probe probe
15.0 years ago Hasan, Ahmed Ryadh - hasar001 ▴ 20
0
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2
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1.2k
views
"import.expr.scheme" error in Package "xps"
Annotation cdf probe xps Annotation cdf probe xps
updated 15.0 years ago by ★ 3.9k • written 15.0 years ago by ▴ 20
0
votes
3
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1.5k
views
filter on Human Gene U133 Plus 2
Microarray probe xps Microarray probe xps
updated 15.0 years ago by ▴ 80 • written 15.0 years ago by ▴ 240
0
votes
7
replies
1.5k
views
Affy chip annotation changes
Annotation hgu133plus2 probe Annotation hgu133plus2 probe
updated 15.0 years ago by 68k • written 15.0 years ago by ▴ 240
0
votes
1
reply
1.2k
views
error msg for probe match (altcdfenvs)
probe altcdfenvs probe altcdfenvs
updated 15.0 years ago by ★ 2.3k • written 15.0 years ago by ▴ 450
0
votes
3
replies
2.8k
views
avereps problem
probe limma PROcess probe limma PROcess
updated 15.0 years ago by 53k • written 15.0 years ago by ▴ 70
0
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0
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967
views
Annotation package for affy SNP6.0
SNP probe affy SNP probe affy
15.0 years ago Qian Liu ▴ 110
0
votes
0
replies
1.1k
views
how to import Agilent CGH custom design xml file into limma
Normalization CGH probe limma Normalization CGH probe limma
15.1 years ago Sean Davis 21k
0
votes
1
reply
2.0k
views
how to import Agilent CGH custom design xml file into limma
aCGH CGH probe aCGH snapCGH aCGH CGH probe aCGH snapCGH
updated 15.1 years ago by 21k • written 15.1 years ago by ▴ 110
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votes
0
replies
1.3k
views
Agi4x44PreProcess - filter.probes function
Annotation GUI zebrafish probe PROcess Annotation GUI zebrafish probe PROcess
15.1 years ago Neel Aluru ▴ 460
0
votes
0
replies
984
views
Pairwise Function Output
probe probe
15.1 years ago Lakshmi Kastury ▴ 40
0
votes
2
replies
1.4k
views
omitted rows using getBM
probe biomaRt probe biomaRt
updated 15.1 years ago by ▴ 500 • written 15.1 years ago by ▴ 70
0
votes
1
reply
633
views
Can gene-set data be a data frame for a package in bioconductor
probe probe
updated 15.1 years ago by 25k • written 15.1 years ago by ▴ 10
0
votes
0
replies
1.1k
views
Simpleaffy problems
Annotation probe affy matchprobes simpleaffy AnnotationDbi Annotation probe affy
15.1 years ago James W. MacDonald 68k
0
votes
0
replies
1.4k
views
Agi4x44PreProcess
GUI zebrafish probe AgiMicroRna GUI zebrafish probe AgiMicroRna
15.1 years ago Neel Aluru ▴ 460
0
votes
0
replies
1.1k
views
goTools question
probe goTools probe goTools
15.1 years ago Pete Shepard ▴ 240
0
votes
0
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2.1k
views
BioNet - interpretation of node score (Eva Benito Garagorri)
SNP Microarray GO Network Clustering Cancer Organism mgug4122a probe limma convert SNP
15.1 years ago Daniela Beißer ▴ 20
0
votes
5
replies
1.5k
views
Package "xps" "import.expr.scheme" problem
Annotation cdf probe Annotation cdf probe
updated 15.1 years ago by ★ 3.9k • written 15.1 years ago by ▴ 80
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votes
4
replies
1.6k
views
Difficulties with tileHMM's gff output
probe probe
updated 15.1 years ago by ▴ 30 • written 15.1 years ago by ▴ 40
1
vote
4
replies
4.3k
views
Detection Above Background (DABG) on Gene Level for Exon and Gene Arrays
probe xps probe xps
updated 15.1 years ago by ★ 3.9k • written 15.1 years ago by ▴ 80
0
votes
8
replies
3.1k
views
[beadarray] Converting Probe IDs to ILMN Gene Names...
probe probe
15.1 years ago James Carman ▴ 150
0
votes
0
replies
1.4k
views
qPCR Event Calendar - autumn/winter 2010
qPCR Normalization Clustering probe microRNA qPCR Normalization Clustering probe microRNA
15.1 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
0
replies
1.1k
views
Agi4x44PreProcess- RSQLite driver: (RS_SQLite_fetch: failed first step: disk I/O error)
Network mgug4122a probe Network mgug4122a probe
15.2 years ago Brown, Joseph ▴ 20
0
votes
1
reply
1.2k
views
Agilent probenames and biomaRt
Annotation probe annotate biomaRt Annotation probe annotate biomaRt
updated 15.2 years ago by 68k • written 15.2 years ago by ▴ 60
0
votes
2
replies
1.0k
views
Combining data from runs
probe probe
updated 15.2 years ago by ▴ 190 • written 15.2 years ago by ▴ 40
0
votes
4
replies
1.5k
views
Analysing expression with tiling arrays
probe probe
updated 15.2 years ago by ▴ 240 • written 15.2 years ago by ▴ 370
0
votes
6
replies
1.9k
views
question regarding removing probes/probe sets before normalization
cdf probe cdf probe
15.2 years ago Jenny Drnevich ★ 2.0k
0
votes
1
reply
1.6k
views
gcrma vs rma
Microarray qPCR probe ROC limma gcrma Microarray qPCR probe ROC limma gcrma
updated 15.2 years ago by ▴ 260 • written 15.2 years ago by ▴ 330
0
votes
0
replies
881
views
question regarding removing probes/probe sets before normalization
Normalization cdf probe Normalization cdf probe
15.2 years ago Jack Luo ▴ 450
0
votes
0
replies
614
views
question regarding removing probes/probe sets before normalization
cdf probe cdf probe
15.2 years ago Jenny Drnevich ★ 2.0k
0
votes
0
replies
1.8k
views
annotations of Human Gene 1.0 ST microarray and oneChannelGUI
Microarray Normalization probe oneChannelGUI Microarray Normalization probe oneChannelGUI
15.2 years ago rcaloger ▴ 500
1,388 results • Page 9 of 28
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Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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