Showing : probe • reset
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annotations of Human Gene 1.0 ST microarray and oneChannelGUI
Microarray Normalization GO probe oneChannelGUI Microarray Normalization GO probe
15.2 years ago ifig319@ifi.csic.es ▴ 10
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1
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1.0k
views
how to find probes' names in probeset
probe probe
updated 15.2 years ago by 68k • written 15.2 years ago by ▴ 350
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4
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1.8k
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using smoothX in Ringo
probe Ringo probe Ringo
updated 15.2 years ago by ▴ 450 • written 15.3 years ago by ▴ 50
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3
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1.1k
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how does limma calculate the coefficients with using different design matrix?
probe probe
15.2 years ago Xiaokuan Wei ▴ 230
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2
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1.6k
views
how does limma calculate the coefficients with using different design matrix?
probe limma probe limma
updated 15.2 years ago by ▴ 230 • written 15.2 years ago by 53k
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6
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1.7k
views
mapping probe sets from yeast2 array to probe sets in hgu133A
hgu133a yeast2 probe hgu133a yeast2 probe
updated 15.2 years ago by ▴ 60 • written 15.3 years ago by ▴ 350
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1
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1.1k
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arrayQualityMetrics and Bioconductor Case Studies
Microarray probe Microarray probe
updated 15.3 years ago by ▴ 310 • written 15.3 years ago by ★ 13k
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2
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1.3k
views
Quality control on Human Affymetrix Exon microarrays
GO Cancer probe affyQCReport GO Cancer probe affyQCReport
updated 15.3 years ago by ★ 13k • written 15.3 years ago by ★ 1.9k
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796
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Bioconductor Digest, Vol 90, Issue 1
Cancer probe limma Cancer probe limma
15.3 years ago Amos Folarin ▴ 20
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replies
887
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Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation probe Annotation probe
15.3 years ago Georg Otto ▴ 120
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1
reply
1.5k
views
Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation zebrafish probe DECIPHER Annotation zebrafish probe DECIPHER
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ▴ 40
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1
reply
1.2k
views
probe ID<-> accession number
probe limma probe limma
updated 15.3 years ago by 68k • written 15.3 years ago by ▴ 200
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1.1k
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arrayQualityMetrics and Bioconductor Case Studies
Microarray probe Microarray probe
15.3 years ago Chintanu ▴ 310
0
votes
1
reply
988
views
Agi4x44PreProcess - Replicated Genes Error
Annotation probe Agi4x44PreProcess Annotation probe Agi4x44PreProcess
updated 15.3 years ago by ▴ 120 • written 15.3 years ago by ▴ 40
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3
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1.2k
views
Normalization of expression values
Normalization probe Normalization probe
updated 15.3 years ago by ★ 13k • written 15.3 years ago by ▴ 140
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5
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2.1k
views
Illumina chip probe sequences
probe probe
updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 50
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0
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849
views
filtering individual flagged values in Agi4x44PreProcess
Annotation probe Agi4x44PreProcess Annotation probe Agi4x44PreProcess
15.3 years ago Leslie M. Turner ▴ 10
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votes
1
reply
1.4k
views
Annotation in Agi4x44PreProcess
Annotation zebrafish probe Agi4x44PreProcess Annotation zebrafish probe Agi4x44PreProcess
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ▴ 40
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1
reply
874
views
removing SNP probes from Drosophila 2 microarray
probe probe
updated 15.3 years ago by 16k • written 15.3 years ago by ▴ 20
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1
reply
1.4k
views
XYS from nimblegen
Annotation probe Annotation probe
updated 15.3 years ago by ★ 4.3k • written 15.3 years ago by ▴ 110
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4
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1.8k
views
Model variable optimisation
Regression probe limma AgiMicroRna Regression probe limma AgiMicroRna
updated 15.3 years ago by ▴ 330 • written 15.3 years ago by ▴ 60
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2
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1.3k
views
how to do probe set mapping between U133A and Gene 1.0 ST array
probe probe
updated 15.3 years ago by 68k • written 15.3 years ago by ▴ 820
0
votes
1
reply
996
views
Replacing an AffyBatch probe set
Normalization probe BUS Normalization probe BUS
updated 15.3 years ago by 68k • written 15.3 years ago by ▴ 20
1
vote
2
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1.6k
views
removal of probes called "Absent"
probe genefilter probe genefilter
updated 15.3 years ago by ▴ 930 • written 15.3 years ago by ▴ 100
0
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0
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606
views
how to find out whether some Affy probe sets are Alu contaminated?
probe probe
15.3 years ago James Anderson ▴ 820
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2
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1.6k
views
error/problem with biomaRt gene symbol query
Microarray Cancer probe biomaRt ASSIGN Microarray Cancer probe biomaRt ASSIGN
updated 15.3 years ago by ▴ 500 • written 15.4 years ago by ▴ 100
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899
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AgiMicroRna and ComBat
miRNA probe AgiMicroRna miRNA probe AgiMicroRna
15.4 years ago Segal, Corrinne ▴ 40
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1.5k
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about lumi support for Illumina HT-12 v4
Annotation probe annotate lumi Annotation probe annotate lumi
15.4 years ago Pan Du ★ 1.2k
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785
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VSN package: vsnrma generate different values from the same data
probe probe
15.4 years ago Wolfgang Huber ★ 13k
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2
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1.4k
views
GO term enrichment
Microarray GO probe biomaRt Microarray GO probe biomaRt
updated 15.4 years ago by ★ 7.2k • written 15.4 years ago by ★ 1.5k
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1.0k
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VSN package: vsnrma generate different values from the same data
probe probe
15.4 years ago Xiaokuan Wei ▴ 230
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3
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1.5k
views
methylumi
probe beadarray probe beadarray
updated 15.4 years ago by 21k • written 15.4 years ago by ▴ 100
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1
reply
1.3k
views
Error message with rmaMicroRna on mouse data in AgiMicroRNA
Cancer probe AgiMicroRna Cancer probe AgiMicroRna
updated 15.4 years ago by ▴ 360 • written 15.4 years ago by ★ 2.0k
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955
views
Error in cvArray in AgiMicroRNA
Cancer probe Cancer probe
15.4 years ago Richard Friedman ★ 2.0k
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2
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1.1k
views
Error message with rmaMicroRna on mouse data in AgiMicroRNA
Cancer probe Cancer probe
updated 15.4 years ago by ▴ 360 • written 15.4 years ago by ★ 2.0k
0
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2
replies
793
views
Questions about calculate gene signal
Microarray probe Microarray probe
updated 15.4 years ago by ★ 2.0k • written 15.4 years ago by ▴ 10
0
votes
9
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2.5k
views
AgiMicroRna - FilterMicroRna question
probe probe
15.4 years ago Neel Aluru ▴ 460
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4
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3.0k
views
biomaRt
probe affy biomaRt probe affy biomaRt
updated 15.4 years ago by 68k • written 15.4 years ago by ▴ 340
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1.3k
views
annotationTools
probe probe
15.4 years ago David Lyon ▴ 340
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8
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2.3k
views
oneChannelGUI and Affymetrix 1.0 ST arrays
GO probe oneChannelGUI GO probe oneChannelGUI
updated 15.4 years ago by ▴ 500 • written 15.4 years ago by ▴ 280
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6
replies
1.7k
views
writing a fasta file in blocks
probe convert probe convert
updated 15.4 years ago by 25k • written 15.4 years ago by ▴ 250
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0
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1.5k
views
Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews Genetics Annotation GO Organism probe biocViews AnnotationDbi BiocViews GO
15.4 years ago Marc Carlson ★ 7.2k
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819
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mogene10stv1 annotation problem
Annotation GO cdf probe Annotation GO cdf probe
15.4 years ago James W. MacDonald 68k
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707
views
kmeans clustering and gene names; was Re: Bioconductor Digest, Vol 87, Issue 10
Clustering probe Clustering probe
15.5 years ago Sean Davis 21k
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2
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1.4k
views
problem with xps and annotation file from affymetrix mirna array
miRNA Annotation cdf probe xps miRNA Annotation cdf probe xps
updated 15.5 years ago by ★ 3.9k • written 15.5 years ago by ▴ 40
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2
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1.4k
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annotating lumi
Microarray Annotation Normalization probe annotate lumi Microarray Annotation probe lumi
updated 15.5 years ago by ▴ 80 • written 15.5 years ago by ▴ 90
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help with lumi
Microarray Annotation Normalization probe lumi Microarray Annotation Normalization probe
updated 15.5 years ago by ★ 1.2k • written 15.5 years ago by ▴ 90
0
votes
1
reply
826
views
Query regarding Contrasts desigs
probe probe
15.5 years ago Sean Davis 21k
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votes
0
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1.7k
views
AgiMicroRna - FilterMicroRna and SignificantMicroRna function
miRNA zebrafish probe AgiMicroRna miRNA zebrafish probe AgiMicroRna
15.5 years ago Neel Aluru ▴ 460
0
votes
1
reply
1.1k
views
Lumi mouse mapping
Annotation probe Annotation probe
updated 15.5 years ago by ▴ 300 • written 15.5 years ago by ▴ 10
1,388 results • Page 10 of 28
Recent ...
Replies
Comment: Suppress warning in RHDF5 write by nicolas.lhuillier • 0
Thanks a lot for the quick and effective reply. I had tried "suppressWarnings" but not "suppressMessages".
Answer: Suppress warning in RHDF5 write by James W. MacDonald 68k
``` > fun <- function() message("this is a message") > fun() this is a message > suppressMessages(fun()) > ```
Answer: Failure to download resources (MeSHDb) from AnnotationHub by shepherl 4.2k
apologies. These are contributed by someone outside the core team. On upload I did not realize they included the older Bioconductor storage…
Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Votes
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Awards • All
Scholar to James W. MacDonald 68k
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