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Showing :
probe
•
reset
0
votes
0
replies
1.5k
views
annotations of Human Gene 1.0 ST microarray and oneChannelGUI
Microarray
Normalization
GO
probe
oneChannelGUI
Microarray
Normalization
GO
probe
15.2 years ago
ifig319@ifi.csic.es
▴ 10
0
votes
1
reply
1.0k
views
how to find probes' names in probeset
probe
probe
updated 15.2 years ago by
James W. MacDonald
68k • written 15.2 years ago by
Glazko, Galina
▴ 350
0
votes
4
replies
1.8k
views
using smoothX in Ringo
probe
Ringo
probe
Ringo
updated 15.2 years ago by
Joern Toedling
▴ 450 • written 15.3 years ago by
Elizabeth Ashley
▴ 50
0
votes
3
replies
1.1k
views
how does limma calculate the coefficients with using different design matrix?
probe
probe
15.2 years ago
Xiaokuan Wei
▴ 230
0
votes
2
replies
1.6k
views
how does limma calculate the coefficients with using different design matrix?
probe
limma
probe
limma
updated 15.2 years ago by
Xiaokuan Wei
▴ 230 • written 15.2 years ago by
Gordon Smyth
53k
0
votes
6
replies
1.7k
views
mapping probe sets from yeast2 array to probe sets in hgu133A
hgu133a
yeast2
probe
hgu133a
yeast2
probe
updated 15.2 years ago by
Alexandre Kuhn
▴ 60 • written 15.3 years ago by
Glazko, Galina
▴ 350
0
votes
1
reply
1.1k
views
arrayQualityMetrics and Bioconductor Case Studies
Microarray
probe
Microarray
probe
updated 15.3 years ago by
Chintanu
▴ 310 • written 15.3 years ago by
Wolfgang Huber
★ 13k
0
votes
2
replies
1.3k
views
Quality control on Human Affymetrix Exon microarrays
GO
Cancer
probe
affyQCReport
GO
Cancer
probe
affyQCReport
updated 15.3 years ago by
Wolfgang Huber
★ 13k • written 15.3 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
796
views
Bioconductor Digest, Vol 90, Issue 1
Cancer
probe
limma
Cancer
probe
limma
15.3 years ago
Amos Folarin
▴ 20
0
votes
0
replies
887
views
Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation
probe
Annotation
probe
15.3 years ago
Georg Otto
▴ 120
0
votes
1
reply
1.5k
views
Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
Annotation
zebrafish
probe
DECIPHER
Annotation
zebrafish
probe
DECIPHER
updated 15.3 years ago by
Marc Carlson
★ 7.2k • written 15.3 years ago by
Samantha England
▴ 40
0
votes
1
reply
1.2k
views
probe ID<-> accession number
probe
limma
probe
limma
updated 15.3 years ago by
James W. MacDonald
68k • written 15.3 years ago by
Yisong Zhen
▴ 200
0
votes
0
replies
1.1k
views
arrayQualityMetrics and Bioconductor Case Studies
Microarray
probe
Microarray
probe
15.3 years ago
Chintanu
▴ 310
0
votes
1
reply
988
views
Agi4x44PreProcess - Replicated Genes Error
Annotation
probe
Agi4x44PreProcess
Annotation
probe
Agi4x44PreProcess
updated 15.3 years ago by
Georg Otto
▴ 120 • written 15.3 years ago by
Samantha England
▴ 40
0
votes
3
replies
1.2k
views
Normalization of expression values
Normalization
probe
Normalization
probe
updated 15.3 years ago by
Steve Lianoglou
★ 13k • written 15.3 years ago by
dorothyc
▴ 140
0
votes
5
replies
2.1k
views
Illumina chip probe sequences
probe
probe
updated 15.3 years ago by
Sean Davis
21k • written 15.3 years ago by
Peter Bazeley
▴ 50
0
votes
0
replies
849
views
filtering individual flagged values in Agi4x44PreProcess
Annotation
probe
Agi4x44PreProcess
Annotation
probe
Agi4x44PreProcess
15.3 years ago
Leslie M. Turner
▴ 10
0
votes
1
reply
1.4k
views
Annotation in Agi4x44PreProcess
Annotation
zebrafish
probe
Agi4x44PreProcess
Annotation
zebrafish
probe
Agi4x44PreProcess
updated 15.3 years ago by
Marc Carlson
★ 7.2k • written 15.3 years ago by
Samantha England
▴ 40
0
votes
1
reply
874
views
removing SNP probes from Drosophila 2 microarray
probe
probe
updated 15.3 years ago by
Hervé Pagès
16k • written 15.3 years ago by
Eli Moss
▴ 20
0
votes
1
reply
1.4k
views
XYS from nimblegen
Annotation
probe
Annotation
probe
updated 15.3 years ago by
Benilton Carvalho
★ 4.3k • written 15.3 years ago by
Marcelo Brandão
▴ 110
0
votes
4
replies
1.8k
views
Model variable optimisation
Regression
probe
limma
AgiMicroRna
Regression
probe
limma
AgiMicroRna
updated 15.3 years ago by
Steve Shen
▴ 330 • written 15.3 years ago by
Tony McBryan
▴ 60
0
votes
2
replies
1.3k
views
how to do probe set mapping between U133A and Gene 1.0 ST array
probe
probe
updated 15.3 years ago by
James W. MacDonald
68k • written 15.3 years ago by
James Anderson
▴ 820
0
votes
1
reply
996
views
Replacing an AffyBatch probe set
Normalization
probe
BUS
Normalization
probe
BUS
updated 15.3 years ago by
James W. MacDonald
68k • written 15.3 years ago by
Eli Moss
▴ 20
1
vote
2
replies
1.6k
views
removal of probes called "Absent"
probe
genefilter
probe
genefilter
updated 15.3 years ago by
Iain Gallagher
▴ 930 • written 15.3 years ago by
Hernando Martínez
▴ 100
0
votes
0
replies
606
views
how to find out whether some Affy probe sets are Alu contaminated?
probe
probe
15.3 years ago
James Anderson
▴ 820
0
votes
2
replies
1.6k
views
error/problem with biomaRt gene symbol query
Microarray
Cancer
probe
biomaRt
ASSIGN
Microarray
Cancer
probe
biomaRt
ASSIGN
updated 15.3 years ago by
Steffen
▴ 500 • written 15.4 years ago by
Sergii Ivakhno
▴ 100
0
votes
0
replies
899
views
AgiMicroRna and ComBat
miRNA
probe
AgiMicroRna
miRNA
probe
AgiMicroRna
15.4 years ago
Segal, Corrinne
▴ 40
0
votes
0
replies
1.5k
views
about lumi support for Illumina HT-12 v4
Annotation
probe
annotate
lumi
Annotation
probe
annotate
lumi
15.4 years ago
Pan Du
★ 1.2k
0
votes
0
replies
785
views
VSN package: vsnrma generate different values from the same data
probe
probe
15.4 years ago
Wolfgang Huber
★ 13k
0
votes
2
replies
1.4k
views
GO term enrichment
Microarray
GO
probe
biomaRt
Microarray
GO
probe
biomaRt
updated 15.4 years ago by
Marc Carlson
★ 7.2k • written 15.4 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
1.0k
views
VSN package: vsnrma generate different values from the same data
probe
probe
15.4 years ago
Xiaokuan Wei
▴ 230
0
votes
3
replies
1.5k
views
methylumi
probe
beadarray
probe
beadarray
updated 15.4 years ago by
Sean Davis
21k • written 15.4 years ago by
Noemi Andor
▴ 100
0
votes
1
reply
1.3k
views
Error message with rmaMicroRna on mouse data in AgiMicroRNA
Cancer
probe
AgiMicroRna
Cancer
probe
AgiMicroRna
updated 15.4 years ago by
Pedro López Romero
▴ 360 • written 15.4 years ago by
Richard Friedman
★ 2.0k
0
votes
0
replies
955
views
Error in cvArray in AgiMicroRNA
Cancer
probe
Cancer
probe
15.4 years ago
Richard Friedman
★ 2.0k
0
votes
2
replies
1.1k
views
Error message with rmaMicroRna on mouse data in AgiMicroRNA
Cancer
probe
Cancer
probe
updated 15.4 years ago by
Pedro López Romero
▴ 360 • written 15.4 years ago by
Richard Friedman
★ 2.0k
0
votes
2
replies
793
views
Questions about calculate gene signal
Microarray
probe
Microarray
probe
updated 15.4 years ago by
Richard Friedman
★ 2.0k • written 15.4 years ago by
Yang Lv
▴ 10
0
votes
9
replies
2.5k
views
AgiMicroRna - FilterMicroRna question
probe
probe
15.4 years ago
Neel Aluru
▴ 460
0
votes
4
replies
3.0k
views
biomaRt
probe
affy
biomaRt
probe
affy
biomaRt
updated 15.4 years ago by
James W. MacDonald
68k • written 15.4 years ago by
David Lyon
▴ 340
0
votes
1
reply
1.3k
views
annotationTools
probe
probe
15.4 years ago
David Lyon
▴ 340
0
votes
8
replies
2.3k
views
oneChannelGUI and Affymetrix 1.0 ST arrays
GO
probe
oneChannelGUI
GO
probe
oneChannelGUI
updated 15.4 years ago by
rcaloger
▴ 500 • written 15.4 years ago by
Steve Taylor
▴ 280
0
votes
6
replies
1.7k
views
writing a fasta file in blocks
probe
convert
probe
convert
updated 15.4 years ago by
Martin Morgan
25k • written 15.4 years ago by
Fahim Md
▴ 250
0
votes
0
replies
1.5k
views
Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews
Genetics
Annotation
GO
Organism
probe
biocViews
AnnotationDbi
BiocViews
GO
15.4 years ago
Marc Carlson
★ 7.2k
0
votes
0
replies
819
views
mogene10stv1 annotation problem
Annotation
GO
cdf
probe
Annotation
GO
cdf
probe
15.4 years ago
James W. MacDonald
68k
0
votes
0
replies
707
views
kmeans clustering and gene names; was Re: Bioconductor Digest, Vol 87, Issue 10
Clustering
probe
Clustering
probe
15.5 years ago
Sean Davis
21k
0
votes
2
replies
1.4k
views
problem with xps and annotation file from affymetrix mirna array
miRNA
Annotation
cdf
probe
xps
miRNA
Annotation
cdf
probe
xps
updated 15.5 years ago by
cstrato
★ 3.9k • written 15.5 years ago by
giacomo.tuana@unimib.it
▴ 40
0
votes
2
replies
1.4k
views
annotating lumi
Microarray
Annotation
Normalization
probe
annotate
lumi
Microarray
Annotation
probe
lumi
updated 15.5 years ago by
ywchen@jimmy.harvard.edu
▴ 80 • written 15.5 years ago by
Taylor, Katie
▴ 90
0
votes
2
replies
1.8k
views
help with lumi
Microarray
Annotation
Normalization
probe
lumi
Microarray
Annotation
Normalization
probe
updated 15.5 years ago by
Pan Du
★ 1.2k • written 15.5 years ago by
Taylor, Katie
▴ 90
0
votes
1
reply
826
views
Query regarding Contrasts desigs
probe
probe
15.5 years ago
Sean Davis
21k
0
votes
0
replies
1.7k
views
AgiMicroRna - FilterMicroRna and SignificantMicroRna function
miRNA
zebrafish
probe
AgiMicroRna
miRNA
zebrafish
probe
AgiMicroRna
15.5 years ago
Neel Aluru
▴ 460
0
votes
1
reply
1.1k
views
Lumi mouse mapping
Annotation
probe
Annotation
probe
updated 15.5 years ago by
Gilbert Feng
▴ 300 • written 15.5 years ago by
AntoninaMitrofanova,PhD
▴ 10
1,388 results • Page
10 of 28
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Comment: Suppress warning in RHDF5 write
by
nicolas.lhuillier
• 0
Thanks a lot for the quick and effective reply. I had tried "suppressWarnings" but not "suppressMessages".
Answer: Suppress warning in RHDF5 write
by
James W. MacDonald
68k
``` > fun <- function() message("this is a message") > fun() this is a message > suppressMessages(fun()) > ```
Answer: Failure to download resources (MeSHDb) from AnnotationHub
by
shepherl
4.2k
apologies. These are contributed by someone outside the core team. On upload I did not realize they included the older Bioconductor storage…
Answer: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis
by
Michael Love
43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
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Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
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