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proxy
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reset
0
votes
7
replies
1.5k
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Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages
Proxy
Bioconductor
GEOquery
Internet_connection_problem
10 months ago
needNGS
• 0
1
vote
3
replies
4.9k
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor
installation
proxy
BiocManager
updated 4.7 years ago by
Martin Morgan
25k • written 4.7 years ago by
chen
• 0
2
votes
1
reply
10k
views
Error: status was 'SSL connect error'
bioconductor
proxy
macOS
R
RStudio
updated 5.3 years ago by
Martin Morgan
25k • written 5.3 years ago by
mcall
▴ 20
2
votes
3
replies
1.9k
views
Could not access the Bioconductor repository
bioconductor
proxy
arrayexpress
updated 6.1 years ago by
James W. MacDonald
68k • written 6.1 years ago by
maxininfa
• 0
0
votes
0
replies
1.3k
views
Rjava proxy configuration ?
rJAVA
java
proxy
connectiontimeout
rdavidwebservice
8.8 years ago
Julien FOURET
• 0
19
votes
4
replies
5.9k
views
biomaRt no longer works with proxy after upgrade
biomart
proxy
rcurl
updated 9.3 years ago by
hygine
▴ 140 • written 9.3 years ago by
enricoferrero
▴ 680
6 results • Page
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Comment: Differential variance analysis - can i use deseq2
by
Michael Love
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VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…
Answer: Use of limma R package with targeted proteomics for DE analysis
by
Gordon Smyth
52k
It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…
Comment: WGCNA
by
pammelala304
• 0
Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.
Comment: Does anyone have the command to download all of the core_nt using blast_db_get()
by
Matthew Thornton
▴ 380
Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…
Comment: normalizatino of dna methylation EPIC data
by
user_bioinfo
• 0
yes actually that's why I did, and its all good! thank you for your response
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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