Bioconductor Proxy

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No_internet_connection_Packages Proxy Bioconductor GEOquery Internet_connection_problem

10 months ago needNGS • 0

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updated 4.7 years ago by Martin Morgan 25k • written 4.7 years ago by chen • 0

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updated 5.3 years ago by Martin Morgan 25k • written 5.3 years ago by mcall ▴ 20

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updated 6.1 years ago by James W. MacDonald 68k • written 6.1 years ago by maxininfa • 0

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8.8 years ago Julien FOURET • 0

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biomart proxy rcurl

updated 9.3 years ago by hygine ▴ 140 • written 9.3 years ago by enricoferrero ▴ 680

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Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Comment: batch effect removal for agilent microarray data by gaye.yilmaz • 0

Hello again, Can using inSilicoMerging handle this situation?

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Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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