Bioconductor Proxy

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No_internet_connection_Packages Proxy Bioconductor GEOquery Internet_connection_problem

22 months ago needNGS • 0

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bioconductor installation proxy BiocManager

updated 5.6 years ago by Martin Morgan 25k • written 5.6 years ago by chen • 0

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bioconductor proxy macOS R RStudio

updated 6.3 years ago by Martin Morgan 25k • written 6.3 years ago by mcall ▴ 20

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bioconductor proxy arrayexpress

updated 7.0 years ago by James W. MacDonald 68k • written 7.0 years ago by maxininfa • 0

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rJAVA java proxy connectiontimeout rdavidwebservice

9.7 years ago Julien FOURET • 0

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biomart proxy rcurl

updated 10.2 years ago by hygine ▴ 140 • written 10.2 years ago by enricoferrero ▴ 680

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Comment: chemmineOB install help by Jeremy • 0

I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

I don't think DESeq2 has the ability to do multi-contrast comparisons, at least based on what I can understand of the manual; I can pick mu…

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A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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