Bioconductor R update

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bioconductor biocgenerics ubuntu package updates r update

7.2 years ago siinemselvi • 0

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clusterprofiler package installation r update

updated 7.7 years ago by tjiagoM ▴ 10 • written 7.8 years ago by klv2706w ▴ 10

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r update upgrade bioclite

updated 8.2 years ago by James W. MacDonald 67k • written 8.2 years ago by Lna • 0

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r update

updated 9.6 years ago by Martin Morgan 25k • written 9.6 years ago by filip.roudnicky • 0

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9.8 years ago meeta.mistry ▴ 30

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upgrade r update

updated 9.8 years ago by Dan Tenenbaum ★ 8.2k • written 9.8 years ago by daniil.sarkisyan ▴ 10

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R update

updated 10.2 years ago by James W. MacDonald 67k • written 10.2 years ago by AJC ▴ 10

7 results • Page 1 of 1

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Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k

I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105

Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k

You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…

Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

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Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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Teacher to Axel Klenk ★ 1.1k