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r update
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2.8k
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Biocgenerics updating problem on ubuntu 17.10
bioconductor
biocgenerics
ubuntu
package updates
r update
7.9 years ago
siinemselvi
• 0
3
votes
3
replies
4.1k
views
problem reinstalling Bioconductor package 'clusterProfiler' after updating R to 3.4.0
clusterprofiler
package installation
r update
updated 8.4 years ago by
tjiagoM
▴ 10 • written 8.5 years ago by
klv2706w
▴ 10
2
votes
1
reply
4.9k
views
Upgrade to Bioconductor 3.4 - problems with R
r update
upgrade
bioclite
updated 8.9 years ago by
James W. MacDonald
68k • written 8.9 years ago by
Lna
• 0
0
votes
2
replies
2.1k
views
package ‘virtualArray’ is not available (for R version 3.2.1)
r update
updated 10.3 years ago by
Martin Morgan
25k • written 10.3 years ago by
filip.roudnicky
• 0
3
votes
11
replies
7.1k
views
Problems getting Bioc 3.1 after upgrade to R_3.2.0
biocinstaller
r update
10.5 years ago
meeta.mistry
▴ 30
3
votes
11
replies
15k
views
Problems updating Bioconductor with R 3.2.0
upgrade
r update
updated 10.5 years ago by
Dan Tenenbaum
★ 8.2k • written 10.5 years ago by
daniil.sarkisyan
▴ 10
2
votes
2
replies
2.2k
views
R 3.1.1 - Update error
R update
updated 10.9 years ago by
James W. MacDonald
68k • written 10.9 years ago by
AJC
▴ 10
7 results • Page
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Comment: DESeq2 for candidate gene analysis
by
piffelpaff
▴ 10
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis
by
Michael Love
43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Votes
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
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