Showing : biocgenerics • reset
2
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2
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DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR Bioconductor DiffBind BiocGenerics
updated 7 months ago by 25k • written 8 months ago by • 0
0
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2
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1.1k
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plotPCA with DESeq2 results in unable to find an inherited method for function plotPCA for signature matrix Error
deseq2 pheatmap RColorBrewer BiocGenerics
updated 15 months ago by 34k • written 15 months ago by • 0
2
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2
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994
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IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
3.3 years ago GENOMIC_region • 0
2
votes
1
reply
558
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Using 'BSgenome::export' to write each chromosome of an organism into separate files
bsgenome biocgenerics bsapply export
updated 3.6 years ago by 58k • written 3.6 years ago by • 0
1
vote
6
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912
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Failure to update BiocGenerics in Ubuntu 17.10 from 0.22.1 to 0.23 and higher
BiocGenerics
3.7 years ago rea ▴ 10
1
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4
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1.6k
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biocLite updating problem with Ubuntu 17.10
ubuntu biocgenerics s4vectors IRanges annotationdbi
updated 3.8 years ago by 25k • written 3.8 years ago by • 0
0
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4
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1.6k
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Biocgenerics updating problem on ubuntu 17.10
bioconductor biocgenerics ubuntu package updates r update
3.8 years ago siinemselvi • 0
7
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4
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1.2k
views
BiocGenerics built with R 3.4.2 changes behaviour
biocgenerics iranges variantannotation
updated 4.0 years ago by 15k • written 4.0 years ago by ▴ 40
6
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6
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841
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Implementing fast mathematical and statistical operations on genomic variables in bioconductor
genomicranges biocgenerics rlelist genomicvars iranges
updated 4.0 years ago by 15k • written 4.0 years ago by ▴ 20
0
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1
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742
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BiocGenerics paste strange behavior (bug?)
biocgenerics
4.1 years ago Peter Langfelder ★ 2.6k
0
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2
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990
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replacing previous import stats::mad by BiocGenerics::mad when loading IRanges
iranges biocgenerics dirichletmultinomial
updated 4.9 years ago by 25k • written 4.9 years ago by • 0
0
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3
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683
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Problem with function combine regarding merging two data frames based on their common rows
bioconductor merge data frames combine biocgenerics
5.9 years ago Konstantinos Yeles ▴ 70
0
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4
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1.6k
views
Access to BiocGenerics 0.11.4 package
BiocGenerics
updated 7.1 years ago by 58k • written 7.1 years ago by ▴ 430
0
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0
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763
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答复: 答复: 答复: problem with \"readCufflinks\"
cummeRbund BiocGenerics cummeRbund BiocGenerics
7.4 years ago Dan Tenenbaum ★ 8.2k
0
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2
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2.7k
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Problem installing BiocGenerics package
BiocGenerics BiocGenerics
updated 7.7 years ago by ★ 8.2k • written 7.7 years ago by ★ 12k
0
votes
2
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1.8k
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Trouble installing BiocGenerics
BiocGenerics BiocGenerics
7.7 years ago Andreas Leha ▴ 30
0
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0
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1.1k
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BiocGenerics::plotMA (was: "egdeR troubles under new R 3.02")
BiocGenerics BiocGenerics
8.0 years ago Wolfgang Huber 13k
0
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2
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1.7k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure Cancer Biobase tkWidgets globaltest BiocInstaller BiocGenerics Cancer
updated 8.5 years ago by 25k • written 8.5 years ago by ▴ 40
0
votes
14
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1.8k
views
BiocGenerics 0.5.6 not loading properly
Rsamtools BiocGenerics Rsamtools BiocGenerics
updated 8.5 years ago by ★ 8.2k • written 8.5 years ago by ▴ 200
0
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2
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1.1k
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GSEABase error parsing msigdb_v3.1.xml
GO Infrastructure hgu95av2 Biobase annotate graph Category AnnotationDbi BiocGenerics GO
updated 8.7 years ago by 25k • written 8.7 years ago by ▴ 80
0
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8
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1.2k
views
IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named
Cancer IRanges BiocGenerics Cancer IRanges BiocGenerics
updated 8.8 years ago by 11k • written 8.8 years ago by 15k
0
votes
1
reply
654
views
Problem installing CummeRbund 2.0.0 (BiocGenerics)
BiocGenerics BiocGenerics
updated 9.0 years ago by ★ 8.2k • written 9.0 years ago by ▴ 10
22 results • Page 1 of 1
Recent ...
Replies
Answer: Microarray - Illumina Metadata by James W. MacDonald 58k
It's not exactly clear to me what you are after, but I'll take a stab at it. First off you probably want to read in using the `GEOquery` pa…
Answer: Can VST be run without runing DESeq or estimateSizeFactors by ATpoint ▴ 850
Just run it, the necessary steps are taken care of internally. You do not have to do anything other than `vst()`.
Comment: GenomicScores package: availableGScores and getGScores functions not working by Robert Castelo ★ 2.7k
Hi, just in case for future users with a similar problem. The package doesn't seem to work with the resources downloaded from the Annotatio…
Comment: GenomicScores package: availableGScores and getGScores functions not working by nattzy94 • 0
EDIT: Ignore this, re-read the warning message in more detail (belatedly). I am now moving the cache. Thanks for the reply, I have since u…
Comment: DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE by Michael Love 34k
See the tidy argument details.
Votes
A: Extracting normalized counts in MEDIPS
Creating qPCRset for nondetects anlaysis from QuantStudio data
Comment: Extracting normalized counts in MEDIPS
Creating qPCRset for nondetects anlaysis from QuantStudio data
Answer: DESeq2 fold change filtering
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Scholar to Robert Castelo ★ 2.7k
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