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read counting
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reset
1
vote
12
replies
4.5k
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Problem with summarizeOverlaps function
genomicalignments
read counting
9.6 years ago
kgorczak
▴ 10
4
votes
3
replies
3.2k
views
Problem with summarizeOverlaps() when reading >1 BAM file: "stop worker failed"
summarizeoverlaps
rnaseq
bplapply
rangedsummarizedexperiment
read counting
8.7 years ago
ErickF
▴ 40
1
vote
4
replies
2.5k
views
DiffBind error with dba.count after update
diffbind
read counting
warning message
chromatin
atac-seq
updated 7.4 years ago by
Gord Brown
▴ 670 • written 7.4 years ago by
tgjohnst
• 0
1
vote
4
replies
2.4k
views
Gviz sashimi read count
Gviz
sashimi
sashimi plots
read counting
bam
updated 8.1 years ago by
Robert Ivanek
▴ 750 • written 8.1 years ago by
bernt.popp
• 0
0
votes
1
reply
1.4k
views
featureCounts : limits on multioverlap (option -O)
featurecounts
read counting
updated 7.1 years ago by
Gordon Smyth
52k • written 7.1 years ago by
marc.gabriel.01
• 0
3
votes
2
replies
1.2k
views
counting the sequencing reads in 10kb regions on a genome-wide scale
read counting
CNV
rsamtools
updated 7.1 years ago by
James W. MacDonald
68k • written 7.1 years ago by
Bogdan
▴ 670
6 results • Page
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Comment: Package developing and interoperation with Bioconductor
by
shepherl
4.1k
Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files
by
Sofia
• 0
I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) : …
Comment: Validity of SingleR with very small bulk RNAseq reference
by
Rohit
• 0
Hi @nhaus So, what did you end up doing in such a scenario? I am facing a similar challenge
Comment: CpGs with genomic positions greater than the chromosome size in EPICv2?
by
Joshua Llano
• 0
Thank you for your reply James. I was worried that it was my mistake.
Comment: Annotation package for Manduca sexta
by
GA
▴ 10
Thank you!
Votes
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
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