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2
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Tximport missing values for group summarizing counts
tximport
rat
reference
GTF
salmon
3.8 years ago
keremwai
• 0
0
votes
2
replies
1.1k
views
sigh of log2FC values in DESeq2
sign
FoldChange
DESeq2
reference
updated 2.3 years ago by
Michael Love
41k • written 2.3 years ago by
yampolsk
• 0
0
votes
2
replies
1.0k
views
Reference manual for rmr2 package
reference
updated 8.5 years ago by
Aaron Lun
★ 28k • written 8.5 years ago by
Agaz Hussain Wani
▴ 260
0
votes
1
reply
2.2k
views
EdgeR: setting reference condition and design matrix headers
edgeR
reference
design matrix
multiple factor design
updated 8.9 years ago by
Aaron Lun
★ 28k • written 8.9 years ago by
Ekarl2
▴ 80
3
votes
3
replies
1.8k
views
EnsDb.Rnorvegicus for Rnor6
annotation
db
reference
rnor6
updated 3.8 years ago by
Guido Hooiveld
★ 3.9k • written 3.8 years ago by
keremwai
• 0
0
votes
0
replies
811
views
Reference for minimum number of probes commonly used for segmentation of microarray data
segmentation
reference
CNA
TCGA
5.2 years ago
jlarsen728
• 0
0
votes
0
replies
822
views
Setting relevel with the JunctionSeq package
junctionseq
relevel
reference
7.2 years ago
Assa Yeroslaviz
★ 1.5k
7 results • Page
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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