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Showing :
regioneR
•
reset
2
votes
5
replies
1.9k
views
permutation test on one set of data to get p-value of highest peaks. permTest? How?
regioneR
permTest
6.1 years ago
linuxborg2
• 0
6
votes
5
replies
3.1k
views
Error running the function permTest
regioner
overlappingpeaks
updated 7.0 years ago by
bernatgel
▴ 150 • written 7.0 years ago by
tharveshliyakat
▴ 10
2
votes
5
replies
1.3k
views
Sample code doesn't seem to be working on fresh install of regioneR
regioner
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
rcavalca
▴ 140
0
votes
3
replies
890
views
Replacement error in PermTest
regioneR
4.8 years ago
AlejandroMA
• 0
1
vote
1
reply
1.2k
views
Given a multifasta file and for each sequence, shuffle middle part of the sequence leaving the flanks intact and the opposite
shuffle
regioner
seqinr
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
Dimitris Polychronopoulos
▴ 80
2
votes
1
reply
1.2k
views
Conflicting results in 'overlapPermTest' function from regioneR package
regioneR
updated 7.3 years ago by
bernatgel
▴ 150 • written 7.3 years ago by
Vinicius Henrique da Silva
▴ 40
2
votes
1
reply
1.2k
views
RegioneR perm test result Plot- how is y axis calculated
regioneR
updated 6.5 years ago by
bernatgel
▴ 150 • written 6.5 years ago by
gonzalpk
▴ 10
0
votes
1
reply
655
views
Is localZScore function of regioneR mask-aware?
regioneR
updated 5.0 years ago by
bernatgel
▴ 150 • written 5.0 years ago by
Miss Agnieszka Aleksandra Golicz
▴ 40
1
vote
1
reply
652
views
regioneR meanInRegions to evaluate mutation accumulation
regioneR
updated 5.0 years ago by
bernatgel
▴ 150 • written 5.0 years ago by
Miss Agnieszka Aleksandra Golicz
▴ 40
0
votes
1
reply
1.1k
views
sampling random regions of same nucleotide composition from hg38 genome
annotatr
regioneR
gkmSVM
updated 5 months ago by
Mahmoud
• 0 • written 3.4 years ago by
rohitsatyam102
▴ 20
6
votes
1
reply
1.8k
views
Retrieving Regions from hg38 of the same GC content and length with a list of elements
regioneR
GRanges
GCcontent
updated 8.4 years ago by
bernatgel
▴ 150 • written 8.5 years ago by
Dimitris Polychronopoulos
▴ 80
0
votes
1
reply
959
views
width(GRanges) increases after randomizeRegions(..) in package RegioneR
genomicranges
regioneR
width
updated 8.3 years ago by
bernatgel
▴ 150 • written 8.3 years ago by
Ludo Pagie
▴ 40
0
votes
1
reply
1.3k
views
regioneR: error when verbose=TRUE
regioneR
updated 7.8 years ago by
bgel
▴ 30 • written 7.8 years ago by
andreucat91
• 0
0
votes
1
reply
679
views
behaviour of regioneR permTest function
regioneR
updated 4.6 years ago by
bernatgel
▴ 150 • written 4.6 years ago by
shoko
• 0
0
votes
1
reply
897
views
need help with overlap overrepresentation using permutation tests for composite genomic ranges
regioneR
granges
iranges
updated 3.6 years ago by
bernatgel
▴ 150 • written 4.0 years ago by
Angel Liang
• 0
0
votes
0
replies
832
views
permTest plot Evobs bar moves and it should not
regioner
permtest
6.1 years ago
linuxborg2
• 0
0
votes
0
replies
655
views
overlapPermTest will not allow randomizing from MASKED hg19
regioner
5.8 years ago
peds09
• 0
17 results • Page
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Comment: Help with running egsea()
by
James W. MacDonald
65k
I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.
Answer: Help with running egsea()
by
James W. MacDonald
65k
There are no arguments to `egsea.base`, as it is meant only as a helper function to return the different methods. In addition, if you are u…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I am working with mouse data. I don't know how to do this, but I will go through it. Can you help me with the second question? how do we …
Comment: [Mfuzz] Error in cmeans(exprs(eset)
by
Caio
• 0
You can have this problem (lines with variance equal to zero) when you run experiments and obtain the data with more samples and use fewer …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The left plot indicates you should use genome segmentation. It is what is called "nonstationary" meaning it looks like there are distinct r…
Votes
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
Answer: How to save the DEXSeq results
Answer: Help with running egsea()
Answer: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
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