Bioconductor Repeated measures

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LIMMA FACTORIAL REPEATED MEASURES differential gene expression

8.7 years ago • updated 8.5 years ago robert.maughan • 0

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dream variancePartition limma differential expression repeated measures

updated 4.6 years ago by Gordon Smyth 50k • written 4.6 years ago by hermidalc ▴ 20

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limma rna-seq mixed model repeated measures

updated 5.6 years ago by Gordon Smyth 50k • written 5.6 years ago by mikhael.manurung ▴ 270

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SVA deseq2 repeated measures

updated 4.6 years ago by Robert Castelo ★ 3.3k • written 4.6 years ago by sara.blocquiaux • 0

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838

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deseq2 rnaseq repeated measures time series design formula

updated 4.3 years ago by Michael Love 41k • written 4.3 years ago by Dorien ▴ 10

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deseq2 repeated measures time course

updated 6.3 years ago by Michael Love 41k • written 6.3 years ago by Marion • 0

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edgeR rnaseq repeated measures

updated 6.1 years ago by Ryan C. Thompson ★ 7.9k • written 6.1 years ago by wjh180 • 0

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583

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deseq2 repeated measures

updated 4.4 years ago by Michael Love 41k • written 4.4 years ago by jperin • 0

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848

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repeated measures

8.5 years ago PJ • 0

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Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

In that case both time and treatment are identical things, so choose one and go with it.

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…

Answer: Once again a "Model matrix not full rank" by James W. MacDonald 65k

The time and treatment are essentially the same thing, so you cannot have both in the model at the same time. Do the numbers 1:3 represent …

Answer: DESeq2 v1.35.0 by Michael Love 41k

That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…

Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by James W. MacDonald 65k

Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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