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0
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21
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6.6k
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BAM files to Genomic Ranges object
Alignment convert Repitools Alignment convert Repitools
updated 5 months ago by • 0 • written 11.3 years ago by ▴ 280
0
votes
5
replies
2.0k
views
Graph of methylation data around TSS - Repitools or other package?
GO Repitools GO Repitools
updated 10.4 years ago by ★ 1.5k • written 10.4 years ago by ★ 1.1k
0
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3
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1.7k
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Repitools/ClusterPlots
BSgenome BSgenome Repitools BSgenome BSgenome Repitools
updated 12.5 years ago by ▴ 580 • written 12.5 years ago by ★ 13k
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3
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1.8k
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How to handle multi-TSS genes in Repitools?
repitools promoter tss annotation
6.1 years ago Ryan C. Thompson ★ 7.9k
1
vote
2
replies
1.3k
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cpgDensityCalc function in Repitools giving contradictory tools
repitools bioconductor cpgDensityCalc
7.0 years ago divyswar01 • 0
0
votes
0
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1.3k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome BSgenome Repitools BSgenome BSgenome Repitools
10.2 years ago Jaritz,Markus ▴ 20
0
votes
0
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989
views
Repitools - featureScores - mappability Bsgenome object
BSgenome BSgenome Repitools BSgenome BSgenome Repitools
10.1 years ago Dario Strbenac ★ 1.5k
0
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0
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882
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SssI free analysis in BayMeth/Repitools
repitools
8.7 years ago Matthias Lienhard ▴ 240
0
votes
0
replies
884
views
Analysis of MBD-seq data without ssl control using BayMeth
Baymeth methylation MBD-seq Repitools
7.9 years ago pm2015 • 0
0
votes
0
replies
963
views
Analysing grouped datasets in repitools
limma Repitools limma Repitools
11.2 years ago Guest User ★ 13k
10 results • Page 1 of 1
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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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