Bioconductor Repitools

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Alignment convert Repitools Alignment convert Repitools

updated 2.2 years ago by Marge • 0 • written 13.0 years ago by José Luis Lavín ▴ 280

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GO Repitools GO Repitools

updated 12.2 years ago by Dario Strbenac ★ 1.6k • written 12.2 years ago by Tim Smith ★ 1.1k

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

updated 14.2 years ago by Chao-Jen Wong ▴ 580 • written 14.2 years ago by Guest User ★ 13k

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repitools promoter tss annotation

7.9 years ago Ryan C. Thompson ★ 7.9k

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repitools bioconductor cpgDensityCalc

8.8 years ago divyswar01 • 0

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

11.9 years ago Jaritz,Markus ▴ 20

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BSgenome BSgenome Repitools BSgenome BSgenome Repitools

11.9 years ago Dario Strbenac ★ 1.6k

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repitools

10.5 years ago Matthias Lienhard ▴ 280

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Baymeth methylation MBD-seq Repitools

9.6 years ago pm2015 • 0

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limma Repitools limma Repitools

12.9 years ago Guest User ★ 13k

10 results • Page 1 of 1

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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

I don't think DESeq2 has the ability to do multi-contrast comparisons, at least based on what I can understand of the manual; I can pick mu…

Comment: Upcoming Ensembl API and data access changes - new blog post available by Hugo Gruson • 0

Thanks for the update. To be very explicit: what is going to happen to the Biomart service, on which the biomaRt bioconductor package relie…

Comment: Are individual-mouse-based statistics possible in CellChat? by LillianaVolkman99 • 0

thank you very much. https://www.biostars.org/p/9617271/

Votes

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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