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repitools
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1.3k
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cpgDensityCalc function in Repitools giving contradictory tools
repitools
bioconductor
cpgDensityCalc
7.1 years ago
divyswar01
• 0
0
votes
21
replies
6.6k
views
BAM files to Genomic Ranges object
Alignment
convert
Repitools
Alignment
convert
Repitools
updated 5 months ago by
Marge
• 0 • written 11.3 years ago by
José Luis Lavín
▴ 280
0
votes
0
replies
976
views
Analysing grouped datasets in repitools
limma
Repitools
limma
Repitools
11.2 years ago
Guest User
★ 13k
0
votes
5
replies
2.1k
views
Graph of methylation data around TSS - Repitools or other package?
GO
Repitools
GO
Repitools
updated 10.5 years ago by
Dario Strbenac
★ 1.5k • written 10.5 years ago by
Tim Smith
★ 1.1k
0
votes
0
replies
1.3k
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
10.2 years ago
Jaritz,Markus
▴ 20
0
votes
0
replies
992
views
Repitools - featureScores - mappability Bsgenome object
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
10.2 years ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
885
views
SssI free analysis in BayMeth/Repitools
repitools
8.8 years ago
Matthias Lienhard
▴ 240
0
votes
0
replies
894
views
Analysis of MBD-seq data without ssl control using BayMeth
Baymeth
methylation
MBD-seq
Repitools
7.9 years ago
pm2015
• 0
0
votes
3
replies
1.7k
views
Repitools/ClusterPlots
BSgenome
BSgenome
Repitools
BSgenome
BSgenome
Repitools
updated 12.5 years ago by
Chao-Jen Wong
▴ 580 • written 12.5 years ago by
Guest User
★ 13k
0
votes
3
replies
1.8k
views
How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
6.2 years ago
Ryan C. Thompson
★ 7.9k
10 results • Page
1 of 1
Recent ...
Replies
Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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