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reproducibility
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16
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3.1k
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Variance between runs of Rsubread
rsubread
alignment
reproducibility
8.5 years ago
Isaac Virshup
• 0
2
votes
4
replies
2.1k
views
no date tag included in docker ps output
docker
reproducibility
9.5 years ago
anton.kratz
▴ 60
0
votes
3
replies
3.0k
views
Locating older version of Bioconductor packages
reproducibility
archive
source code
updated 9.4 years ago by
Dan Tenenbaum
★ 8.2k • written 9.4 years ago by
brucbruc
• 0
1
vote
2
replies
1.6k
views
Package archive for the purpose of reproducible research
archive
reproducibility
updated 9.3 years ago by
Martin Morgan
25k • written 9.3 years ago by
robert.bruccoleri
▴ 10
3
votes
2
replies
1.3k
views
DESeq2: Question regarding changes between Bioconductor 3.2 and 3.4 or recent version changes
deseq2
new version
bioconductor
software error
reproducibility
8.4 years ago
Daniel Elsner
• 0
3
votes
2
replies
1.1k
views
Does a specific bioconductor version constrain versions of non-bioconductor packages?
reproducibility
versions
installing
base-r
updated 5.0 years ago by
Mike Smith
★ 6.6k • written 5.0 years ago by
Yannick Wurm
▴ 40
0
votes
0
replies
968
views
Which tools should we use to make research reproducible?
bioconductor
R
reproducibility
8.4 years ago
lwumd1400
• 0
7 results • Page
1 of 1
Recent ...
Replies
Comment: Validity of SingleR with very small bulk RNAseq reference
by
Rohit
• 0
Hi @nhaus So, what did you end up doing in such a scenario? I am facing a similar challenge
Comment: CpGs with genomic positions greater than the chromosome size in EPICv2?
by
Joshua Llano
• 0
Thank you for your reply James. I was worried that it was my mistake.
Comment: Annotation package for Manduca sexta
by
GA
▴ 10
Thank you!
Comment: Improving performance of edgeR and limma while adjusting for multiple confounder
by
ATpoint
★ 4.8k
If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…
Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species
by
Mike Smith
★ 6.6k
Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …
Votes
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
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