Showing : resultsNames • reset
1
vote
3
replies
1.5k
views
resultsNames(dds) not showing all contrasts
DESeq2 resultsNames lfcShrink
updated 2.5 years ago by ★ 4.7k • written 2.5 years ago by • 0
0
votes
8
replies
2.4k
views
DESeq2 coefficient names
resultsNames DESeq2 coefficient
3.8 years ago Jane ▴ 10
0
votes
5
replies
877
views
Unexpected results
resultsNames DESeq2
written 4.1 years ago by ▴ 10
0
votes
3
replies
1.1k
views
Pairwise comparisons for "both between and within subject"experiment using DESeq2
pairwise deseq2 extracting contrasts resultsnames results deseq2
updated 6.2 years ago by 43k • written 6.2 years ago by • 0
0
votes
2
replies
1.4k
views
Discrepancy in extracting contrasts
deseq2 resultsnames batch effect contrast
updated 7.4 years ago by 43k • written 7.4 years ago by ▴ 10
1
vote
7
replies
10k
views
DESeq2 resultsNames(dds) not giving the right comparisons?.
deseq2 DESeq2 resultsNames
7.6 years ago davichen ▴ 10
0
votes
1
reply
1.4k
views
resultnames(dds) not giving correct output
deseq2 resultsnames
updated 7.6 years ago by 43k • written 7.6 years ago by ▴ 10
0
votes
4
replies
3.8k
views
DESeq2 extracting results: resultsNames does not show the expected output
deseq2 rnaseq resultsnames
7.8 years ago zeynep.nenseth • 0
2
votes
4
replies
4.5k
views
DESeq results names when using interaction terms
DESeq deseq2 resultsnames
8.6 years ago akaever ▴ 30
4
votes
4
replies
2.5k
views
How to handle the change in resultsNames() for DESeq2 ?
deseq2 resultsnames multifactorial design
updated 8.7 years ago by 43k • written 8.7 years ago by ▴ 10
0
votes
1
reply
3.2k
views
DESeq2 releveling not changing resultsNames options
deseq2 relevel resultsNames multifactorial design
updated 9.0 years ago by 43k • written 9.0 years ago by ▴ 20
11 results • Page 1 of 1
Recent ...
Replies
Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies by ATpoint ★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
Awards • All
Popular Question to maltethodberg ▴ 180
Popular Question to abadgerw • 0
Popular Question to Jim Nemesh ▴ 10
Popular Question to Wolfgang Huber ★ 13k
Teacher to James W. MacDonald 68k
Locations • All
Finland, 1 hour ago
EMBL European Molecular Biology Laboratory, 3 hours ago
The city by the bay, 3 hours ago
Hong Kong, 7 hours ago
Germany, 8 hours ago
Traffic: 1124 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6